Concepedia

ReaDDyMM: Fast Interacting Particle Reaction-Diffusion Simulations Using Graphical Processing Units

Johann Biedermann, Alexander Ullrich, Johannes Schöneberg, Frank Noé

Biophysical Journal · 2015 · 33 citations · 7 references

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References

7

VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations

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OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation

Peter Eastman, Mark S. Friedrichs, John D. Chodera et al. · Journal of Chemical Theory and Computation · 2012 · 750 citations

, , +15

Accelerating molecular dynamic simulation on graphics processing units

Mark S. Friedrichs, Peter Eastman, Vishal Vaidyanathan et al. · Journal of Computational Chemistry · 2009 · 550 citations · Full text

, , +14

Simulating Biochemical Networks at the Particle Level and in Time and Space: Green’s Function Reaction Dynamics

Jeroen S. van Zon, Pieter Rein ten Wolde · Physical Review Letters · 2005 · 188 citations

, , +17

ReaDDy - A Software for Particle-Based Reaction-Diffusion Dynamics in Crowded Cellular Environments

Johannes Schöneberg, Frank Noé · PLoS ONE · 2013 · 150 citations · Full text

, , +17