Concepedia

Upregulation of the microRNA cluster at the Dlk1-Dio3 locus in lung adenocarcinoma

Paul N. Valdmanis, Biswajoy Roy‐Chaudhuri, Hong-Xiang Kim, Leanne C. Sayles, Yanyan Zheng, C-H Chuang, Deborah R. Caswell, Kent‐Man Chu, Yi Zhang, Monte M. Winslow,

Oncogene · 2013 · 48 citations · 58 references

DOI

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References

58

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna, Matthew G. Hanna, Eric Banks et al. · Genome Research · 2010 · 30K citations · Full text

, , +17

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff et al. · Nature Protocols · 2012 · 12.9K citations · Full text

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