Genome Announcements · 2014 · 23 citations · 15 references
Life SciencesGeneticsMicrobiologyEpigenomicsGenomicsMicrobial GeneticsComparative Microbial GenomicsGenome SequencingMetagenomic AnalysisPathogen GenomicsPathogen Sequence AnalysisVirulence GenomicsDna Methylation MappingHelicobacter Pylori InfectionHelicobacter Pylori PathogenesisMethylation DetectionVirulence Factor AnnotationVirulence Gene AnalysisWhole-genome Bisulfite SequencingWhole-genome Sequencing Analysis
We report the complete genome sequences of eight Helicobacter pylori strains isolated from patients with gastrointestinal diseases in Okinawa, Japan. Whole-genome sequencing and DNA methylation detection were performed using the PacBio platform. De novo assembly determined a single, complete contig for each strain. Furthermore, methylation analysis identified virulence factor genotype-dependent motifs.
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
Chen-Shan Chin, David H. Alexander, Patrick Marks et al. · Nature Methods · 2013 · 4.3K citations
Real-Time DNA Sequencing from Single Polymerase Molecules
John Eid, Adrian Fehr, Jeremy Gray et al. · Science · 2008 · 3.8K citations
The complete genome sequence of the gastric pathogen Helicobacter pylori
Jean-F. Tomb, Owen White, Anthony R. Kerlavage et al. · Nature · 1997 · 3.6K citations · Full text
Direct detection of DNA methylation during single-molecule, real-time sequencing
Benjamin A. Flusberg, Dale R. Webster, Jessica H. Lee et al. · Nature Methods · 2010 · 1.5K citations · Full text