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Heng Li, Alec Wysoker, Tim Fennell, +5

Bioinformatics

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Ben Langmead, Steven L. Salzberg

Nature Methods

Long-read SequencingSequence AssemblyNatural SciencesComputational BiologyMolecular Biology +5

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Ben Langmead, Cole Trapnell, Mihai Pop, +1

Genome biology

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Manfred Grabherr, Brian J. Haas, Moran Yassour, +17

Nature Biotechnology

Long-read SequencingFunctional GenomicsNatural SciencesGeneticsSequence Analysis +10

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Cole Trapnell, Brian A. Williams, Geo Pertea, +6

Nature Biotechnology

Developmental BiologyFunctional GenomicsRna BiologyRna-seq RevealsTranscriptomics Technology +8

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff, +7

Nature Protocols

Differential GeneNatural SciencesGeneticsRna BiologyMolecular Biology +9

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg

Bioinformatics

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

Bioinformatics

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Stefan Götz, Juan M. García‐Gómez, Javier Terol, +7

Nucleic Acids Research

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Gene finding in novel genomes

Ian Korf

BMC Bioinformatics