Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism

VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 64.1K citations

Engineering, Visual Molecular Dynamics, Molecular Biology +5

UCSF Chimera—A visualization system for exploratory research and analysis

Eric F. Pettersen, Thomas D. Goddard, Conrad C. Huang et al. · Journal of Computational Chemistry · 2004 · 46.8K citations

Interactive Visualization, Extensible Visualization System, Ucsf Chimera +15

Scalable molecular dynamics with NAMD

J. C. Phillips, Rosemary Braun, Wei Wang et al. · Journal of Computational Chemistry · 2005 · 17.1K citations · Full text

Refinement of Macromolecular Structures by the Maximum-Likelihood Method

Garib N. Murshudov, A. A. Vagin, E. J. Dodson · Acta Crystallographica Section D Biological Crystallography · 1997 · 14.8K citations

<i>MolProbity</i>: all-atom structure validation for macromolecular crystallography

Vincent B. Chen, W.B. Arendall, Jeffrey J. Headd et al. · Acta Crystallographica Section D Biological Crystallography · 2009 · 14.4K citations · Full text

X-ray Crystallography, Crystal Structure, Structural Bioinformatics +16