Nature Cell Biology · 2015 · 153 citations · 54 references
Histone ModificationsChromatinLineage PlasticityDevelopmental BiologyChromatin RemodelingMedicineEpigenetic ChangeStem Cell ResearchHistone Deacetylase Sirt6Tet-mediated ProductionStem CellsCell BiologyEpigeneticsEmbryonic Stem Cell
54
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 66.2K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 22.5K citations · Full text
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.1K citations · Full text