Journal of the American Chemical Society · 2007 · 74 citations · 22 references
Life SciencesBiochemistryMolecular BiologyComparative GenomicsEnzymologyMolecular EvolutionBiosynthetic Gene ClustersFlavonoid BiosynthesisPhenylpropanoid BiosynthesisPhylogenetic Sequence AnalysisPolyketide BiosynthesisSecondary Metabolite BiosynthesisAromatic Compound BiosynthesisClade DelimitationFungal Polyketide BiosynthesisKetoreductase DomainsPhylogenetic IdentificationPhylogenetic Taxonomy
The benastatins, pradimicins, fredericamycins, and members of the griseorhodin/rubromycin family represent a structurally and functionally diverse group of long-chain polyphenols from actinomycetes. Comparison of their biosynthetic gene clusters (ben, prm, fdm, grh, rub) revealed that all loci harbor genes coding for a similar, yet uncharacterized, type of ketoreductases. In a phylogenetic survey of representative KRs involved in type II PKS systems, we found that it is generally possible to deduce the KR regiospecificity (C-9, C-15, C17) from the amino acid sequence and thus to predict the nature of the aromatic polyketide (e.g., angucycline, anthracycline, benzoisochromanequinones). We hypothezised that the new clade of KRs is characteristic for biosynthesis of polyphenols with an extended angular architecture we termed "pentangular". To test this hypothesis, we demonstrated the biogenetic relationship between benastatin and the structurally unrelated spiro ketal griseorhodin by generating a mutant producing collinone, a pentangular pathway intermediate. The benastatin pathway served as a model to characterize the KR. Gene inactivation of benL resulted in the formation of a series of 19-hydroxy benastatin and bequinostatin derivatives (e.g., benastatin K and benastatin L). These results clearly showed that BenL functions as a C-19 KR in pentangular pathways.
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Molecular cloning: A laboratory manual
Prescott L. Deininger · Analytical Biochemistry · 1990 · 86.2K citations
Hidden Markov models for detecting remote protein homologies.
Kevin Karplus, Curtis L. Barrett, Richard Hughey · Bioinformatics · 1998 · 1.1K citations · Full text