Concepedia

A travel guide to Cytoscape plugins

Rintaro Saito, Michael Smoot, Keiichiro Ono, Johannes Ruscheinski, Pengliang Wang, Samad Lotia, Alexander R. Pico, Gary D. Bader, Trey Ideker

Nature Methods · 2012 · 1.5K citations · 64 references

DOIFull text

Open access

Concepts

References

64

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha et al. · Proceedings of the National Academy of Sciences · 2005 · 54.5K citations · Full text

, , +23

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 52.1K citations · Full text

Gene Ontology: tool for the unification of biology

Michael Ashburner, Catherine A. Ball, Judith A. Blake et al. · Nature Genetics · 2000 · 43.3K citations · Full text

, , +11

KEGG: Kyoto Encyclopedia of Genes and Genomes

Minoru Kanehisa · Nucleic Acids Research · 2000 · 37.5K citations · Full text

KEGG: Kyoto Encyclopedia of Genes and Genomes

Hiroyuki Ogata, Susumu Goto, Kazushige Sato et al. · Nucleic Acids Research · 1999 · 32.2K citations · Full text

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