Proceedings of the National Academy of Sciences · 2014 · 559 citations · 51 references
Life SciencesInfectious DiseasesMicrobiologyBacteriologyGenomicsMicrobial GeneticsAntibiotic ResistanceAntibiotic Resistance GeneticsBacterial EpidemiologyBacterial InfectionsMolecular Epidemiology Of ResistanceResistance GenesBacterial Multidrug ResistanceFluoroquinolone AntibioticsGenetic Mobile ElementsMolecular Epidemiology PhylogeneticsMolecular Genetic EpidemiologyMultidrug-resistant OrganismsMultidrug-resistant PathogensPhylogenetic Analysis Of Resistant Isolates
Significance Escherichia coli sequence type 131 (ST131) is a globally disseminated multidrug-resistant clone associated with human urinary tract and bloodstream infections. Here, we have used genome sequencing to map the temporal and spatial relationship of a large collection of E. coli ST131 strains isolated from six distinct geographical regions across the world. We show that E. coli ST131 strains are distinct from other extraintestinal pathogenic E. coli and arose from a single progenitor strain prior to the year 2000.
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.7K citations · Full text
Easyfig: a genome comparison visualizer
Mitchell J. Sullivan, Nicola K. Petty, Scott A. Beatson · Bioinformatics · 2011 · 3.7K citations · Full text