PLoS ONE · 2014 · 36 citations · 63 references
B. PumilusBiochemistryGeneticsBacteriologyHigh ResistanceEnvironmental MicrobiologyOxidative Stress ResponseMicrobiologyMolecular MicrobiologyBacillus PumilusReactive Oxygen SpecieMedicineRedox BiologyOxidative Stress
Bacillus pumilus is characterized by a higher oxidative stress resistance than other comparable industrially relevant Bacilli such as B. subtilis or B. licheniformis. In this study the response of B. pumilus to oxidative stress was investigated during a treatment with high concentrations of hydrogen peroxide at the proteome, transcriptome and metabolome level. Genes/proteins belonging to regulons, which are known to have important functions in the oxidative stress response of other organisms, were found to be upregulated, such as the Fur, Spx, SOS or CtsR regulon. Strikingly, parts of the fundamental PerR regulon responding to peroxide stress in B. subtilis are not encoded in the B. pumilus genome. Thus, B. pumilus misses the catalase KatA, the DNA-protection protein MrgA or the alkyl hydroperoxide reductase AhpCF. Data of this study suggests that the catalase KatX2 takes over the function of the missing KatA in the oxidative stress response of B. pumilus. The genome-wide expression analysis revealed an induction of bacillithiol (Cys-GlcN-malate, BSH) relevant genes. An analysis of the intracellular metabolites detected high intracellular levels of this protective metabolite, which indicates the importance of bacillithiol in the peroxide stress resistance of B. pumilus.
63
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt, Gwo-Liang Chen, Philip LoCascio et al. · BMC Bioinformatics · 2010 · 12.2K citations · Full text
The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
Frank Kunst, Naotaka Ogasawara, Ivan Moszer et al. · Nature · 1997 · 3.7K citations · Full text
Improved microbial gene identification with GLIMMER
Art L. Delcher · Nucleic Acids Research · 1999 · 2.5K citations · Full text