Concepedia

Molecular Dynamics of a Protein Surface: Ion-Residues Interactions

Ran Friedman, Esther Nachliel, Menachem Gutman

Biophysical Journal · 2005 · 77 citations · 110 references

Open access

Concepts

Natural SciencesBiochemistryBiophysicsMolecular BiophysicsStructural BiologySurface ChemistryBiomolecular InterfacesElectrostatics In BiomoleculesIntermolecular ForcesMolecular DynamicsProtein DynamicsProtein StructureIon-exchange InteractionsIon-ion InteractionsIon-surface InteractionsMolecular Dynamics Of BindingProtein Interface EnergeticsProtein Surface ElectrostaticsProtein-surface Interactions

References

110

VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke, Klaus Schulten · Journal of Molecular Graphics · 1996 · 66.6K citations

Natural Sciences, Biophysics, Physics +12

The Protein Data Bank

Helen M. Berman · Nucleic Acids Research · 2000 · 39.8K citations

Life Sciences, Biochemistry, Bioinformatics +10

Molecular dynamics with coupling to an external bath

Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren et al. · The Journal of Chemical Physics · 1984 · 31K citations · Full text

Natural Sciences, Chemistry, Physics +17

Particle mesh Ewald: An <i>N</i>⋅log(<i>N</i>) method for Ewald sums in large systems

Tom Darden, Darrin M. York, Lee G. Pedersen · The Journal of Chemical Physics · 1993 · 30.7K citations · Full text

Natural Sciences, Chemistry, Physics +13

LINCS: A linear constraint solver for molecular simulations

Berk Hess, Henk Bekker, Herman J. C. Berendsen et al. · Journal of Computational Chemistry · 1997 · 17.1K citations

Natural Sciences, Chemistry, Physics +14