Concepedia

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance

Charles Wang, Binsheng Gong, Pierre R. Bushel, Jean Thierry‐Mieg, Danielle Thierry‐Mieg, Joshua Xu, Hong Fang, Huixiao Hong, Jie Shen, Zhenqiang Su,

Nature Biotechnology · 2014 · 551 citations · 39 references

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39

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

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Differential expression analysis for sequence count data

Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14.3K citations

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TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

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Summaries of Affymetrix GeneChip probe level data

Rafael A. Irizarry · Nucleic Acids Research · 2003 · 5K citations · Full text

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