Differentiating progressive from nonprogressive T1 bladder cancer by gene expression profiling: Applying RNA-sequencing analysis on archived specimens

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14.3K citations

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TopHat: discovering splice junctions with RNA-Seq

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Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring

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RNA-Seq gene expression estimation with read mapping uncertainty

Bo Li, Victor Ruotti, Ron Stewart et al. · Bioinformatics · 2009 · 1.3K citations · Full text

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