VMD: Visual molecular dynamics

William Humphrey, Andrew Dalke, Klaus Schulten

Journal of Molecular Graphics

EngineeringVisual Molecular DynamicsMolecular BiologyComputational ChemistryMolecular Dynamics +3

The Protein Data Bank

Helen M. Berman

Nucleic Acids Research

Biological DatabaseBiochemistryStructural BioinformaticsNatural SciencesMedicine +10

The Elasticity of a Single Supercoiled DNA Molecule

Terence R. Strick, Jean‐François Allemand, David Bensimon, +2

Science

ChromatinIndividual Lambda DnaSingle Molecule BiophysicsDnaDna Nanotechnology +12

DNA sequence-dependent deformability deduced from protein–DNA crystal complexes

Wilma K. Olson, Andrey Gorin, Xiang‐Jun Lu, +2

Proceedings of the National Academy of Sciences

Ionic effects on the elasticity of single DNA molecules

Christoph G. Baumann, Steven B. Smith, Victor A. Bloomfield, +1

Proceedings of the National Academy of Sciences

Crystal Structure of the Lactose Operon Repressor and Its Complexes with DNA and Inducer

Mitchell Lewis, Geoffrey Chang, Nancy C. Horton, +5

Science

A standard reference frame for the description of nucleic acid base-pair geometry

Wilma K. Olson, Manju Bansal, S.K. Burley, +13

Journal of Molecular Biology

ChromatinNucleic Acid ChemistryStructural BioinformaticsNatural SciencesRna Structure Prediction +9

Structural transitions and elasticity from torque measurements on DNA

Zev Bryant, Michael D. Stone, Jeff Gore, +3

Nature

Dna NanotechnologyDnaNatural SciencesDna AnalysisDna Replication +7

Genetic Regulation: The Lac Control Region

Robert C. Dickson, John Abelson, Wayne M. Barnes, +1

Science

GeneticsMolecular BiologyMolecular GeneticsLac Promoter-operator RegionProtein Genetics +14

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.

Alexander Bolshoy, Peter McNamara, Rodney E. Harrington, +1

Proceedings of the National Academy of Sciences

DnaExperimental EstimationGeneticsDna Wedge AnglesDna Analysis +19