Intrinsic Curvature of DNA Influences LacR-Mediated Looping

Sachin Goyal, Todd D. Lillian, Seth Blumberg, +3

Biophysical Journal

Dna NanotechnologyProtein FoldingNatural SciencesMedicineDna Analysis +6

Cooperative kinking at distant sites in mechanically stressed DNA

Troy A. Lionberger, Davide Demurtas, Guillaume Witz, +4

Nucleic Acids Research

Dna AnalysisCooperative KinkingMolecular BiologyDna NanotechnologyHyperflexible Kinks +14

A compliant end-effector for microscribing

Bennion R. Cannon, Todd D. Lillian, Spencer P. Magleby, +2

Precision Engineering

EngineeringMicrofabricationCompliant End-effectorBiomedical EngineeringElectronic Packaging +3

A Multiscale Dynamic Model of DNA Supercoil Relaxation by Topoisomerase IB

Todd D. Lillian, Maryna Taranova, Jeff Wereszczynski, +2

Biophysical Journal

Biophysical ModelingProtein FoldingNatural SciencesDna AnalysisMolecular Biology +8

Computational Analysis of Looping of a Large Family of Highly Bent DNA by LacI

Todd D. Lillian, Sachin Goyal, Jason D. Kahn, +2

Biophysical Journal

Dna NanotechnologyDna SequencingNatural SciencesLarge FamilyComputational Analysis +11

FRET studies of a landscape of Lac repressor-mediated DNA loops

Aaron R. Haeusler, Kathy A. Goodson, Todd D. Lillian, +4

Nucleic Acids Research

Simulation of DNA Supercoil Relaxation

Ikenna D. Ivenso, Todd D. Lillian

Biophysical Journal

Dna NanotechnologyNatural SciencesDna AnalysisDna ReplicationMolecular Biology +4

DNA Modeling Reveals an Extended Lac Repressor Conformation in Classic In Vitro Binding Assays

Andrew D. Hirsh, Todd D. Lillian, Troy A. Lionberger, +1

Biophysical Journal

BiochemistryMolecular Biological MethodProtein FoldingNatural SciencesBiomolecular Analysis +7

Structural Ensemble and Dynamics of Toroidal-like DNA Shapes in Bacteriophage ϕ29 Exit Cavity

Andrew D. Hirsh, Maryna Taranova, Troy A. Lionberger, +3

Biophysical Journal

BacteriophageMolecular BiologyStructural BiologyToroidal-like Dna ShapesMicrobiology +4

Electrostatics and Self-Contact in an Elastic Rod Approximation for DNA

Todd D. Lillian, Noel C. Perkins

Journal of Computational and Nonlinear Dynamics

Dna NanotechnologyEngineeringRod ApproximationProtein FoldingDna Supercoiling +13