Concepedia

Genome-wide investigation and transcriptome analysis of the WRKY gene family in Gossypium

Mingquan Ding, Jiadong Chen, Yurong Jiang, Lifeng Lin, Yuefen Cao, Minhua Wang, Yuting Zhang, Junkang Rong, Wuwei Ye

Molecular Genetics and Genomics · 2014 · 104 citations · 82 references

DOI

Concepts

References

82

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

Koichiro Tamura, Joel T. Dudley, M Nei et al. · Molecular Biology and Evolution · 2007 · 28.8K citations · Full text

, , +17

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li, Colin N. Dewey · BMC Bioinformatics · 2011 · 23.4K citations · Full text

, , +15

PAML 4: Phylogenetic Analysis by Maximum Likelihood

Molecular Biology and Evolution · 2007 · 14.8K citations · Full text

, , +17

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

, , +16

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Yupeng Wang, Haibao Tang, Jeremy D. DeBarry et al. · Nucleic Acids Research · 2012 · 8.4K citations · Full text

, , +17