Concepedia

Transcriptome Alignment

Transcriptome Alignment is a computational method that establishes homologous correspondences between transcript sequences across different species to enable comparative analysis of gene expression patterns and regulatory mechanisms.

281

Publications

85.7K

Citations

1.9K

Authors

565

Institutions

Publications per year

2017–2026

86

Parents

Publications

281

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

, , +17

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

, , +14

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

Brian Haas · Nucleic Acids Research · 2003 · 2.5K citations · Full text

, , +17

The Ensembl gene annotation system

Bronwen Aken, Sarah Ayling, Daniel Barrell et al. · Database · 2016 · 1.2K citations · Full text

, , +17

Computational analysis of bacterial RNA-Seq data

Ryan McClure, Divya Balasubramanian, Yan Sun et al. · Nucleic Acids Research · 2013 · 652 citations · Full text

, , +16

1–5 of 281

Authors

1.9K

  1. TG
    T Gingeras

    Cold Spring Harbor Laboratory, United States

    3 publications · 56.6K citations

    3

    h-index

  2. AD
    Alexander Dobin

    Cold Spring Harbor Laboratory, United States

    3 publications · 56.6K citations

    3

    h-index

  3. MG
    Michael G. Katze

    University of Washington, United States

    3 publications · 191 citations

    3

    h-index

  4. YD
    Yanming Deng

    Jiangsu Academy of Agricultural Sciences, China

    2 publications · 65 citations

    2

    h-index

  5. GM
    Gi‐Sik Min

    Inha University, South Korea

    2 publications · 40 citations

    2

    h-index

1–5 of 1.9K

Institutions

565

  1. Chinese Academy of Sciences

    Beijing, China

    14 h-index

    55 publications

    2K citations

  2. Huazhong Agricultural University

    Wuhan, China

    8 h-index

    34 publications

    1.5K citations

  3. University of Chinese Academy of Sciences

    Beijing, China

    8 h-index

    13 publications

    425 citations

  4. Chinese Academy of Agricultural Sciences

    Beijing, China

    7 h-index

    16 publications

    485 citations

  5. Texas A&M University

    College Station, United States

    6 h-index

    36 publications

    2.5K citations

  6. National Institutes of Health

    Bethesda, United States

    6 h-index

    15 publications

    1.9K citations

  7. Wellcome Sanger Institute

    Cambridge, United Kingdom

    5 h-index

    32 publications

    29.7K citations

  8. Chinese Academy of Tropical Agricultural Sciences

    Haikou, China

    5 h-index

    26 publications

    901 citations

1–8 of 565

Venues

  1. PLoS ONE

    24 publications · 1.1K citations

    18

    h-index

  2. Gene

    15 publications · 486 citations

    13

    h-index

  3. Marine Genomics

    17 publications · 446 citations

    13

    h-index

  4. BMC Genomics

    10 publications · 542 citations

    10

    h-index

  5. Nucleic Acids Research

    8 publications · 3.7K citations

    8

    h-index

1–5