Concepedia

edgeR for Differential RNA-seq and ChIP-seq Analysis: An Application to Stem Cell Biology

Olga Nikolayeva, Mark D. Robinson

Methods in molecular biology · 2014 · 246 citations · 24 references

DOI

Concepts

References

24

R: A Language and Environment for Statistical Computing

R Core Team · 2000 · 353K citations · Full text

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The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

, , +17

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

, , +14

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

, , +14

Bioconductor: open software development for computational biology and bioinformatics

Robert Gentleman, Vincent J. Carey, Douglas M. Bates et al. · Genome biology · 2004 · 12.5K citations · Full text

, , +8