Concepedia

RNA Sequencing: From Sample Preparation to Analysis

Sho Maekawa, Ayako Suzuki, Sumio Sugano, Yutaka Suzuki

Methods in molecular biology · 2014 · 18 citations · 22 references

DOI

Concepts

References

22

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

, , +14

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text

, , +13

An integrated encyclopedia of DNA elements in the human genome

Nature · 2012 · 19.4K citations · Full text

, , +16

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

, , +16

Differential expression analysis for sequence count data

Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text

, , +15