Concepedia

Variable Modification Search

Variable Modification Search is a computational strategy in proteomics that belongs to the class of database search methods and specifically enables the identification of post-translational modifications by allowing certain amino acid residues to exhibit variable mass shifts during peptide-spectrum matching.

6

Publications

943

Citations

32

Authors

11

Institutions

Publications per year

2017–2026

1

Parents

Publications

6

Byonic: Advanced Peptide and Protein Identification Software

Marshall Bern, Yong J. Kil, Christopher H. Becker · Current Protocols in Bioinformatics · 2012 · 687 citations

, , +17

VEMS 3.0:  Algorithms and Computational Tools for Tandem Mass Spectrometry Based Identification of Post-translational Modifications in Proteins

Rune Matthiesen, Morten Beck Trelle, Peter Højrup et al. · Journal of Proteome Research · 2005 · 125 citations

, , +17

Global Identification of Protein Post-translational Modifications in a Single-Pass Database Search

Michael R. Shortreed, Craig D. Wenger, Brian L. Frey et al. · Journal of Proteome Research · 2015 · 58 citations · Full text

, , +16

Human Proteomic Variation Revealed by Combining RNA-Seq Proteogenomics and Global Post-Translational Modification (G-PTM) Search Strategy

Anthony J. Cesnik, Michael R. Shortreed, Gloria Sheynkman et al. · Journal of Proteome Research · 2015 · 29 citations · Full text

, , +17

ISPTM: An Iterative Search Algorithm for Systematic Identification of Post-translational Modifications from Complex Proteome Mixtures

Xin Huang, Lin Huang, Hong Peng et al. · Journal of Proteome Research · 2013 · 22 citations

, , +17

1–5 of 6

Authors

32

  1. BL
    Brian L. Frey

    University of Wisconsin–Madison, United States

    2 publications · 87 citations

    2

    h-index

  2. GS
    Gloria Sheynkman

    University of Virginia, United States

    2 publications · 87 citations

    2

    h-index

  3. MR
    Michael R. Shortreed

    University of Wisconsin–Madison, United States

    2 publications · 87 citations

    2

    h-index

  4. LM
    Lloyd M. Smith

    University of Wisconsin–Madison, United States

    2 publications · 87 citations

    2

    h-index

  5. ML
    Miao Liu

    Chinese Academy of Sciences, China

    1 publications · 22 citations

    1

    h-index

1–5 of 32

Institutions

11

  1. University of Wisconsin–Madison

    Madison, United States

    2 h-index

    13 publications

    609 citations

  2. University of Nebraska Medical Center

    Omaha, United States

    1 h-index

    9 publications

    198 citations

  3. ETH Zurich

    Zurich, Switzerland

    1 h-index

    2 publications

    44 citations

  4. Palo Alto Research Center

    Palo Alto, United States

    1 h-index

    1 publications

    687 citations

  5. Sanford Burnham Prebys Medical Discovery Institute

    La Jolla, United States

    1 h-index

    1 publications

    22 citations

  6. Protein Metrics (United States)

    San Carlos, United States

    1 h-index

    3 publications

    2.1K citations

  7. University of Nebraska–Lincoln

    Lincoln, United States

    1 h-index

    11 publications

    242 citations

  8. Nebraska Medical Center

    Omaha, United States

    1 h-index

    8 publications

    176 citations

1–8 of 11

Venues

  1. Journal of Proteome Research

    JPR · 4 publications · 234 citations

    4

    h-index

  2. Methods in enzymology on CD-ROM/Methods in enzymology

    Book series · 1 publications · 22 citations

    1

    h-index

  3. Current Protocols in Bioinformatics

    1 publications · 687 citations

    1

    h-index

1–3