Concepedia

Transposable Element Annotation

Transposable Element Annotation is a computational genomics task that identifies and characterizes the genomic locations, types, and structural features of transposable elements within a DNA sequence to distinguish them from other genomic functional elements.

129

Publications

18.7K

Citations

641

Authors

255

Institutions

Publications per year

2017–2026

59

Parents

Publications

129

RepeatModeler2 for automated genomic discovery of transposable element families

Jullien M. Flynn, Robert Hubley, Clément Goubert et al. · Proceedings of the National Academy of Sciences · 2020 · 4K citations · Full text

, , +15

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

David Ellinghaus, Stefan Kurtz, Ute Willhoeft · BMC Bioinformatics · 2008 · 1.8K citations · Full text

, , +15

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

Shujun Ou, Weija Su, Yi Liao et al. · Genome biology · 2019 · 1.5K citations · Full text

, , +17

The TIGR Rice Genome Annotation Resource: improvements and new features

Shuai Ouyang, W. Zhu, John P. Hamilton et al. · Nucleic Acids Research · 2006 · 1.4K citations · Full text

, , +17

The Dfam community resource of transposable element families, sequence models, and genome annotations

Jessica M. Storer, Robert Hubley, Jeb Rosen et al. · Mobile DNA · 2021 · 795 citations · Full text

, , +15

1–5 of 129

Authors

641

  1. HQ
    Hadi Quesneville

    Centre National de la Recherche Scientifique, France

    10 publications · 1.7K citations

    10

    h-index

  2. CN
    Candice N. Hirsch

    University of Minnesota, United States

    8 publications · 1.9K citations

    8

    h-index

  3. SN
    Sarah N. Anderson

    University of Minnesota, United States

    7 publications · 433 citations

    7

    h-index

  4. NM
    Nathan M. Springer

    University of Minnesota, United States

    6 publications · 378 citations

    6

    h-index

  5. RH
    Robert Hubley

    Institute for Systems Biology, United States

    7 publications · 5.4K citations

    6

    h-index

1–5 of 641

Institutions

255

  1. Centre National de la Recherche Scientifique

    Paris, France

    12 h-index

    34 publications

    2.4K citations

  2. University of Minnesota

    Minneapolis, United States

    10 h-index

    46 publications

    3.9K citations

  3. University of Georgia

    Athens, United States

    9 h-index

    23 publications

    2K citations

  4. Institute for Systems Biology

    Seattle, United States

    6 h-index

    24 publications

    17.3K citations

  5. Iowa State University

    Ames, United States

    6 h-index

    22 publications

    7.5K citations

  6. McGill University

    Montreal, Canada

    6 h-index

    11 publications

    941 citations

  7. Université Paris Cité

    Paris, France

    6 h-index

    19 publications

    4.1K citations

  8. Université Paris-Saclay

    Gif-sur-Yvette, France

    5 h-index

    23 publications

    1.7K citations

1–8 of 255

Venues

  1. Nucleic Acids Research

    10 publications · 2.7K citations

    10

    h-index

  2. Mobile DNA

    10 publications · 1.3K citations

    10

    h-index

  3. BMC Genomics

    6 publications · 378 citations

    7

    h-index

  4. Molecular Genetics and Genomics

    7 publications · 250 citations

    7

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 6 publications · 535 citations

    6

    h-index

1–5