Concepedia

Transmission Network Inference

Transmission Network Inference is a computational and statistical methodology within genomic and phylogenetic epidemiology that reconstructs the pathways of infectious disease spread among individuals or populations by integrating pathogen genetic sequences with epidemiological data to infer the most probable transmission links.

47

Publications

2.9K

Citations

422

Authors

147

Institutions

Publications per year

2017–2026

24

Parents

Publications

47

Bayesian Inference of Infectious Disease Transmission from Whole-Genome Sequence Data

Xavier Didelot, Jennifer L. Gardy, Caroline Colijn · Molecular Biology and Evolution · 2014 · 223 citations · Full text

, , +17

Social and Genetic Networks of HIV-1 Transmission in New York City

Joel O. Wertheim, Sergei L. Kosakovsky Pond, Lisa A. Forgione et al. · PLoS Pathogens · 2017 · 214 citations · Full text

, , +17

Identifiability and estimation of multiple transmission pathways in cholera and waterborne disease

Marisa C. Eisenberg, Suzanne L. Robertson, Joseph H. Tien · Journal of Theoretical Biology · 2013 · 209 citations

, , +14

Linking social and pathogen transmission networks using microbial genetics in giraffe (<i><scp>G</scp>iraffa camelopardalis</i>)

Kimberly VanderWaal, Edward R. Atwill, Lynne A. Isbell et al. · Journal of Animal Ecology · 2013 · 208 citations · Full text

, , +17

Transmission Network Parameters Estimated From HIV Sequences for a Nationwide Epidemic

Andrew Brown, Samantha Lycett, Lucy A. Weinert et al. · The Journal of Infectious Diseases · 2011 · 195 citations · Full text

, , +17

1–5 of 47

Authors

422

  1. JO
    Joel O. Wertheim

    University of California San Diego, United States

    6 publications · 604 citations

    6

    h-index

  2. SL
    Sergei L. Kosakovsky Pond

    University of California San Diego, United States

    4 publications · 533 citations

    4

    h-index

  3. DM
    Davey M. Smith

    University of California San Diego, United States

    4 publications · 528 citations

    4

    h-index

  4. SR
    Sanjay R. Mehta

    University of California San Diego, United States

    4 publications · 524 citations

    4

    h-index

  5. MA
    Mark A. Stevenson

    The University of Melbourne, Australia

    3 publications · 55 citations

    3

    h-index

1–5 of 422

Institutions

147

  1. University of California San Diego

    San Diego, United States

    9 h-index

    33 publications

    3.7K citations

  2. University of British Columbia

    Vancouver, Canada

    4 h-index

    7 publications

    408 citations

  3. Imperial College London

    London, United Kingdom

    4 h-index

    10 publications

    1.1K citations

  4. University of Oxford

    Oxford, United Kingdom

    4 h-index

    12 publications

    702 citations

  5. University of Washington

    Seattle, United States

    4 h-index

    5 publications

    404 citations

  6. University College London

    London, United Kingdom

    3 h-index

    9 publications

    549 citations

  7. University of North Carolina at Chapel Hill

    Chapel Hill, United States

    3 h-index

    11 publications

    494 citations

  8. The University of Melbourne

    Melbourne, Australia

    3 h-index

    6 publications

    103 citations

1–8 of 147

Venues

  1. PLoS ONE

    5 publications · 280 citations

    5

    h-index

  2. Scientific Reports

    3 publications · 82 citations

    3

    h-index

  3. The Journal of Infectious Diseases

    JID · 3 publications · 377 citations

    3

    h-index

  4. Journal of The Royal Society Interface

    2 publications · 91 citations

    2

    h-index

  5. PLoS Computational Biology

    2 publications · 223 citations

    2

    h-index

1–5