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Transcriptomics-constrained Modeling

Transcriptomics-Constrained Modeling is a computational framework within genome-scale metabolic modeling that integrates transcriptomic data to constrain and refine metabolic flux predictions by differentially regulating reaction bounds based on gene expression levels.

18

Publications

1K

Citations

60

Authors

37

Institutions

Publications per year

2017–2026

11

Parents

Publications

18

Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism

Daniel Machado, Markus J. Herrgård · PLoS Computational Biology · 2014 · 438 citations · Full text

, , +17

Improving metabolic flux predictions using absolute gene expression data

Dave Lee, Kieran Smallbone, Warwick B. Dunn et al. · BMC Systems Biology · 2012 · 152 citations · Full text

, , +14

Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach

Ali Navid, Eivind Almaas · BMC Systems Biology · 2012 · 76 citations · Full text

, , +17

Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis

Mingyuan Tian, Jennifer L. Reed · Bioinformatics · 2018 · 72 citations · Full text

, , +16

Integration of large-scale data for extraction of integrated Arabidopsis root cell-type specific models

Michael Scheunemann, Siobhán M. Brady, Zoran Nikoloski · Scientific Reports · 2018 · 42 citations · Full text

, , +17

1–5 of 18

Authors

60

  1. JL
    Jennifer L. Reed

    University of Wisconsin–Madison, United States

    2 publications · 84 citations

    2

    h-index

  2. AN
    Ali Navid

    Lawrence Livermore National Laboratory, United States

    1 publications · 76 citations

    1

    h-index

  3. EY
    Elisabeth Yaneske

    Teesside University, United Kingdom

    1 publications · 28 citations

    1

    h-index

  4. SB
    Siddharth Bhadra-Lobo

    Rutgers, The State University of New Jersey, United States

    1 publications · 13 citations

    1

    h-index

  5. ZW
    Zhuo Wang

    Shanghai Jiao Tong University, China

    1 publications · 19 citations

    1

    h-index

1–5 of 60

Institutions

37

  1. Technical University of Denmark

    Kongens Lyngby, Denmark

    2 h-index

    4 publications

    908 citations

  2. Novo Nordisk Foundation

    Copenhagen, Denmark

    2 h-index

    4 publications

    908 citations

  3. Rutgers, The State University of New Jersey

    New Brunswick, United States

    2 h-index

    4 publications

    56 citations

  4. University of Wisconsin–Madison

    Madison, United States

    2 h-index

    4 publications

    168 citations

  5. Sorbonne Université

    Paris, France

    1 h-index

    2 publications

    76 citations

  6. Universitat de Barcelona

    Barcelona, Spain

    1 h-index

    1 publications

    16 citations

  7. University of California, Davis

    Davis, United States

    1 h-index

    1 publications

    42 citations

  8. Institute of Environmental Assessment and Water Research

    Barcelona, Spain

    1 h-index

    4 publications

    64 citations

1–8 of 37

Venues

  1. BMC Systems Biology

    3 publications · 266 citations

    3

    h-index

  2. BMC Bioinformatics

    2 publications · 58 citations

    2

    h-index

  3. Bioinformatics

    2 publications · 84 citations

    2

    h-index

  4. BMC Genomics

    1 publications · 16 citations

    1

    h-index

  5. Molecular Omics

    1 publications · 15 citations

    1

    h-index

1–5