Concepedia
Statistics
Publications
23
Citations
2.6K
H-Index
20
Active since
2010
Affiliations
University of Minho(Current)
European Molecular Biology Laboratory
Novo Nordisk Foundation
Technical University of Denmark
University of Cambridge
Daniel Machado is an author at University of Minho specializing in medicine, microbiology, and systems biology.
Top concepts
MedicineEngineeringMicrobiologySystems BiologyBiologyEnvironmental MicrobiologyMicrobiomeBioenergeticsMicrobial EcologyMetabolic Engineering
Publications per year
2010–2023
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
Daniel Machado, Sergej Andrejev, Melanie Tramontano et al. · Nucleic Acids Research · 2018 · 696 citations · Full text
Engineering, Automated Reconstruction, Synthetic Ecology +19
Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism
Daniel Machado, Markus J. Herrgård · PLoS Computational Biology · 2014 · 421 citations · Full text
Constraint-based Models, Engineering, Genetics +20
Polarization of microbial communities between competitive and cooperative metabolism
Daniel Machado, Oleksandr M. Maistrenko, Sergej Andrejev et al. · Nature Ecology & Evolution · 2021 · 316 citations · Full text
Biology, Microbial Diversity, Cooperative Metabolism +7
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
Sonja Blasche, Yong‐Kyu Kim, Ruben A. Mars et al. · Nature Microbiology · 2021 · 279 citations · Full text
Microbial Diversity, Metabolic Cooperation, Kefir Microbial Community +7
Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes
Jonathan M. Monk, Anna Koza, Miguel A. Campodonico et al. · Cell Systems · 2016 · 148 citations · Full text
Molecular Ecology, Genetics, Omics +9
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