Concepedia

Transcriptomic Batch Correction

Transcriptomic Batch Correction is a computational methodology designed to identify and remove non-biological, experimentally induced variations in gene expression data while preserving biologically relevant signals across different transcriptomic datasets.

29

Publications

1.5K

Citations

172

Authors

88

Institutions

Publications per year

2017–2026

22

Parents

Publications

29

Unifying cancer and normal RNA sequencing data from different sources

Qingguo Wang, Joshua Armenia, Chao Zhang et al. · Scientific Data · 2018 · 225 citations · Full text

, , +17

BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes

Tongxin Wang, Travis S. Johnson, Wei Shao et al. · Genome biology · 2019 · 150 citations · Full text

, , +16

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench

Ruben Chazarra-Gil, Stijn van Dongen, Vladimir Yu Kiselev et al. · Nucleic Acids Research · 2021 · 100 citations · Full text

, , +15

Batch correction of microarray data substantially improves the identification of genes differentially expressed in Rheumatoid Arthritis and Osteoarthritis

Peter Kupfer, Reinhard Guthke, Dirk Pohlers et al. · BMC Medical Genomics · 2012 · 83 citations · Full text

, , +17

Batch alignment of single-cell transcriptomics data using deep metric learning

Xiaokang Yu, Xinyi Xu, Jingxiao Zhang et al. · Nature Communications · 2023 · 82 citations · Full text

, , +17

1–5 of 29

Authors

172

  1. MH
    Martin Hemberg

    Wellcome Sanger Institute, United Kingdom

    2 publications · 113 citations

    2

    h-index

  2. TW
    Tongxin Wang

    Indiana University Bloomington, United States

    2 publications · 165 citations

    2

    h-index

  3. ZL
    Zixiao Lu

    Southern Medical University, China

    2 publications · 165 citations

    2

    h-index

  4. VY
    Vladimir Yu Kiselev

    Wellcome Sanger Institute, United Kingdom

    2 publications · 113 citations

    2

    h-index

  5. TS
    Travis S. Johnson

    Indiana University – Purdue University Indianapolis, United States

    2 publications · 165 citations

    2

    h-index

1–5 of 172

Institutions

88

  1. Wellcome Sanger Institute

    Cambridge, United Kingdom

    3 h-index

    10 publications

    498 citations

  2. Indiana University Bloomington

    Bloomington, United States

    2 h-index

    2 publications

    165 citations

  3. Edinburgh Cancer Research

    Edinburgh, United Kingdom

    2 h-index

    11 publications

    554 citations

  4. Yale University

    New Haven, United States

    2 h-index

    5 publications

    178 citations

  5. University of Padua

    Padua, Italy

    2 h-index

    2 publications

    46 citations

  6. Indiana University – Purdue University Indianapolis

    Indianapolis, United States

    2 h-index

    10 publications

    825 citations

  7. Indiana University School of Medicine

    Indianapolis, United States

    2 h-index

    10 publications

    825 citations

  8. UNC Lineberger Comprehensive Cancer Center

    Chapel Hill, United States

    2 h-index

    5 publications

    231 citations

1–8 of 88

Venues

  1. Bioinformatics

    5 publications · 163 citations

    5

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 74 citations

    4

    h-index

  3. Nature Communications

    3 publications · 220 citations

    3

    h-index

  4. BMC Genomics

    2 publications · 94 citations

    2

    h-index

  5. PLoS ONE

    2 publications · 63 citations

    2

    h-index

1–5