Concepedia

Three-dimensional Spatial Transcriptomics

Three-Dimensional Spatial Transcriptomics is a spatial transcriptomics methodology that extends two-dimensional gene expression mapping to three-dimensional tissue architectures by reconstructing or directly measuring the spatial coordinates of transcriptomic activity within intact biological specimens.

38

Publications

2.7K

Citations

368

Authors

151

Institutions

Publications per year

2017–2026

34

Parents

Publications

38

Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder

Kangning Dong, Shihua Zhang · Nature Communications · 2022 · 678 citations · Full text

, , +14

Comprehensive analysis of spatial architecture in primary liver cancer

Rui Wu, Wenbo Guo, Xinyao Qiu et al. · Science Advances · 2021 · 362 citations · Full text

, , +13

Alignment and integration of spatial transcriptomics data

Ron Zeira, Max Land, Alexander Strzalkowski et al. · Nature Methods · 2022 · 306 citations · Full text

, , +13

Open-ST: High-resolution spatial transcriptomics in 3D

Marie Schott, Daniel León-Periñán, Elena Splendiani et al. · Cell · 2024 · 199 citations · Full text

, , +8

STalign: Alignment of spatial transcriptomics data using diffeomorphic metric mapping

Kalen Clifton, Manjari Anant, Gohta Aihara et al. · Nature Communications · 2023 · 138 citations · Full text

, , +17

1–5 of 38

Authors

368

  1. XX
    Xun Xu

    BGI Group (China), China

    4 publications · 138 citations

    4

    h-index

  2. KD
    Kangning Dong

    Academy of Mathematics and Systems Science, China

    4 publications · 744 citations

    4

    h-index

  3. SZ
    Shihua Zhang

    Academy of Mathematics and Systems Science, China

    3 publications · 713 citations

    3

    h-index

  4. YL
    Yuxiang Li

    BGI Group (China), China

    5 publications · 155 citations

    3

    h-index

  5. AC
    Ao Chen

    BGI Group (China), China

    3 publications · 104 citations

    3

    h-index

1–5 of 368

Institutions

151

  1. University of Chinese Academy of Sciences

    Beijing, China

    8 h-index

    36 publications

    2.4K citations

  2. Chinese Academy of Sciences

    Beijing, China

    7 h-index

    33 publications

    2.2K citations

  3. Fudan University

    Shanghai, China

    5 h-index

    21 publications

    2.8K citations

  4. BGI Group (China)

    Shenzhen, China

    5 h-index

    79 publications

    2.4K citations

  5. National Center for Mathematics and Interdisciplinary Sciences

    Beijing, China

    4 h-index

    13 publications

    1.6K citations

  6. Academy of Mathematics and Systems Science

    Beijing, China

    4 h-index

    13 publications

    1.6K citations

  7. Broad Institute

    Cambridge, United States

    4 h-index

    15 publications

    1.1K citations

  8. Howard Hughes Medical Institute

    Chevy Chase, United States

    4 h-index

    4 publications

    156 citations

1–8 of 151

Venues

  1. Nature Communications

    8 publications · 1K citations

    8

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 184 citations

    8

    h-index

  3. Nucleic Acids Research

    1 publications · 22 citations

    1

    h-index

  4. Science Advances

    1 publications · 362 citations

    1

    h-index

  5. Bioinformatics

    1 publications · 13 citations

    1

    h-index

1–5