Concepedia

Tad Dynamics

Tad Dynamics is a computational framework that models the temporal changes in three-dimensional chromatin architecture by quantifying the spatial reorganization and interaction frequency variations of Topologically Associating Domains across different cellular states or time points.

23

Publications

1.1K

Citations

178

Authors

87

Institutions

Publications per year

2017–2026

20

Parents

Publications

23

Interphase human chromosome exhibits out of equilibrium glassy dynamics

Guang Shi, Lei Liu, Changbong Hyeon et al. · Nature Communications · 2018 · 186 citations · Full text

, , +17

Phase separation of OCT4 controls TAD reorganization to promote cell fate transitions

Jia Wang, Haopeng Yu, Qian Ma et al. · Cell stem cell · 2021 · 159 citations

, , +16

A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus

A. Rasim Barutcu, Philipp G. Maass, Jordan P. Lewandowski et al. · Nature Communications · 2018 · 132 citations · Full text

, , +17

TADCompare: An R Package for Differential and Temporal Analysis of Topologically Associated Domains

Kellen G. Cresswell, Mikhail G. Dozmorov · Frontiers in Genetics · 2020 · 93 citations · Full text

, , +16

Three-dimensional folding dynamics of the Xenopus tropicalis genome

Longjian Niu, Wei Shen, Zhaoying Shi et al. · Nature Genetics · 2021 · 63 citations · Full text

, , +17

1–5 of 23

Authors

178

  1. DH
    David Holcman

    Institut de Biologie de l'École Normale Supérieure, France

    3 publications · 76 citations

    3

    h-index

  2. OS
    Ofir Shukron

    Institut de Biologie de l'École Normale Supérieure, France

    3 publications · 76 citations

    3

    h-index

  3. GZ
    Guangjie Zeng

    Beijing Institute of Genomics, China

    2 publications · 60 citations

    2

    h-index

  4. CL
    Cheng Li

    Peking University, China

    2 publications · 177 citations

    2

    h-index

  5. AL
    Angsheng Li

    Chinese Academy of Sciences, China

    2 publications · 60 citations

    2

    h-index

1–5 of 178

Institutions

87

  1. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    16 publications

    306 citations

  2. Institut de Biologie de l'École Normale Supérieure

    Paris, France

    3 h-index

    7 publications

    168 citations

  3. Chinese Academy of Sciences

    Beijing, China

    2 h-index

    4 publications

    104 citations

  4. Beijing Institute of Genomics

    Beijing, China

    2 h-index

    5 publications

    142 citations

  5. Université Paris Cité

    Paris, France

    2 h-index

    1 publications

    14 citations

  6. Institut de Génétique Humaine

    Montpellier, France

    2 h-index

    2 publications

    28 citations

  7. Sorbonne Université

    Paris, France

    2 h-index

    5 publications

    70 citations

  8. Beihang University

    Beijing, China

    2 h-index

    4 publications

    120 citations

1–8 of 87

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 68 citations

    3

    h-index

  2. Nature Communications

    3 publications · 334 citations

    3

    h-index

  3. Nature Genetics

    1 publications · 63 citations

    2

    h-index

  4. Epigenetics & Chromatin

    2 publications · 80 citations

    2

    h-index

  5. 1

    h-index

1–5