Concepedia

Structural Substitution Matrices

Structural Substitution Matrices is a type of substitution matrix that incorporates three-dimensional structural information of proteins to quantify the likelihood of amino acid substitutions based on their structural environment and physicochemical compatibility, distinguishing it from sequence-based matrices by prioritizing structural constraints in evolutionary inference.

66

Publications

6K

Citations

220

Authors

118

Institutions

Publications per year

2017–2026

15

Variants

Structure-based Substitution Matrices

Parents

Publications

66

PISCES: a protein sequence culling server

Guoli Wang, Roland L. Dunbrack · Bioinformatics · 2003 · 1.8K citations · Full text

, , +16

Amino acid substitution matrices from an information theoretic perspective

Stephen F. Altschul · Journal of Molecular Biology · 1991 · 643 citations · Full text

, , +10

Amino acid substitutions in structurally related proteins a pattern recognition approach

J.L. Risler, Marie-Odile Delorme, H. Delacroix et al. · Journal of Molecular Biology · 1988 · 306 citations

, , +14

RSEARCH: Finding homologs of single structured RNA sequences

Robert J. Klein, Sean R. Eddy · BMC Bioinformatics · 2003 · 277 citations · Full text

, , +15

Do aligned sequences share the same fold?

Ruben Abagyan, Serge Batalov · Journal of Molecular Biology · 1997 · 246 citations · Full text

, , +17

1–5 of 66

Authors

220

  1. RL
    Robert L. Jernigan

    Iowa State University, United States

    3 publications · 124 citations

    3

    h-index

  2. RB
    Russ B. Altman

    Stanford University, United States

    2 publications · 188 citations

    2

    h-index

  3. MS
    Mona Singh

    Princeton University, United States

    2 publications · 66 citations

    2

    h-index

  4. AE
    Andrew E. Torda

    Universität Hamburg, Germany

    2 publications · 71 citations

    2

    h-index

  5. FK
    Frank Keul

    Technische Universität Darmstadt, Germany

    2 publications · 52 citations

    2

    h-index

1–5 of 220

Institutions

118

  1. Laboratoire d'Informatique, de Modélisation et d'Optimisation des Systèmes

    Aubière, France

    2 h-index

    3 publications

    51 citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    2 h-index

    4 publications

    100 citations

  3. Inserm

    Paris, France

    2 h-index

    5 publications

    180 citations

  4. University of Tübingen

    Tübingen, Germany

    2 h-index

    2 publications

    31 citations

  5. University of Tasmania

    Hobart, Australia

    2 h-index

    6 publications

    93 citations

  6. National Cancer Institute

    Bethesda, United States

    2 h-index

    3 publications

    129 citations

  7. University of Auckland

    Auckland, New Zealand

    2 h-index

    2 publications

    31 citations

  8. Université Paris Cité

    Paris, France

    2 h-index

    5 publications

    180 citations

1–8 of 118

Venues

  1. BMC Bioinformatics

    11 publications · 665 citations

    11

    h-index

  2. Bioinformatics

    7 publications · 2.1K citations

    7

    h-index

  3. Proteins Structure Function and Bioinformatics

    6 publications · 243 citations

    6

    h-index

  4. Nucleic Acids Research

    4 publications · 297 citations

    4

    h-index

  5. Molecular Biology and Evolution

    MBE · 3 publications · 290 citations

    3

    h-index

1–5