Concepedia

Spatial Transcriptome Reconstruction

Spatial Transcriptome Reconstruction is a computational method that infers the spatial organization of gene expression within a tissue section by integrating dissociated transcriptomic data with spatial reference information, thereby enabling the reconstruction of genome-wide expression patterns at cellular or subcellular resolution.

66

Publications

25.1K

Citations

715

Authors

245

Institutions

Publications per year

2017–2026

58

Parents

Publications

66

Spatial reconstruction of single-cell gene expression data

Rahul Satija, Jeffrey A. Farrell, David Gennert et al. · Nature Biotechnology · 2015 · 7.7K citations · Full text

, , +14

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

Patrik L. Ståhl, Fredrik Salmén, Sanja Vicković et al. · Science · 2016 · 3.9K citations

, , +17

Spatio-temporal transcriptome of the human brain

Hyo Jung Kang, Yuka Imamura Kawasawa, Feng Cheng et al. · Nature · 2011 · 2.2K citations

, , +14

Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2

Robert R. Stickels, Evan Murray, Pawan Kumar et al. · Nature Biotechnology · 2020 · 1.4K citations · Full text

, , +10

High-definition spatial transcriptomics for in situ tissue profiling

Sanja Vicković, Gökçen Eraslan, Fredrik Salmén et al. · Nature Methods · 2019 · 1.2K citations · Full text

, , +14

1–5 of 66

Authors

715

  1. JL
    Joakim Lundeberg

    KTH Royal Institute of Technology, Sweden

    7 publications · 7K citations

    7

    h-index

  2. XX
    Xun Xu

    BGI Group (China), China

    7 publications · 756 citations

    7

    h-index

  3. JF
    José Fernández Navarro

    KTH Royal Institute of Technology, Sweden

    5 publications · 6.5K citations

    5

    h-index

  4. AC
    Ao Chen

    BGI Group (China), China

    5 publications · 563 citations

    5

    h-index

  5. PL
    Patrik L. Ståhl

    KTH Royal Institute of Technology, Sweden

    4 publications · 5.5K citations

    4

    h-index

1–5 of 715

Institutions

245

  1. BGI Group (China)

    Shenzhen, China

    9 h-index

    88 publications

    11.4K citations

  2. University of Chinese Academy of Sciences

    Beijing, China

    8 h-index

    31 publications

    4K citations

  3. KTH Royal Institute of Technology

    Stockholm, Sweden

    7 h-index

    40 publications

    58.2K citations

  4. Science for Life Laboratory

    Stockholm, Sweden

    7 h-index

    42 publications

    67.6K citations

  5. Karolinska Institutet

    Stockholm, Sweden

    7 h-index

    31 publications

    39.3K citations

  6. Broad Institute

    Cambridge, United States

    6 h-index

    36 publications

    50.8K citations

  7. Chinese Academy of Sciences

    Beijing, China

    6 h-index

    27 publications

    5.9K citations

  8. Harvard University

    Cambridge, United States

    5 h-index

    13 publications

    13.8K citations

1–8 of 245

Venues

  1. Nature Biotechnology

    8 publications · 11.2K citations

    8

    h-index

  2. Nature Communications

    4 publications · 343 citations

    4

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 165 citations

    4

    h-index

  4. Nature Methods

    6 publications · 1.7K citations

    4

    h-index

  5. Cell

    3 publications · 2.2K citations

    3

    h-index

1–5