Concepedia

Spatial Single-cell Integration

Spatial Single-Cell Integration is a computational framework that combines high-resolution spatially resolved data with single-cell omics profiles to reconstruct context-aware cellular landscapes, distinguished by its explicit incorporation of spatial coordinates to infer location-dependent molecular heterogeneity.

7

Publications

655

Citations

52

Authors

28

Institutions

Publications per year

2017–2026

6

Parents

Publications

7

scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics

Dongyuan Song, Qingyang Wang, Guanao Yan et al. · Nature Biotechnology · 2023 · 149 citations · Full text

, , +16

SpiceMix enables integrative single-cell spatial modeling of cell identity

Benjamin Chidester, Tianming Zhou, Shahul Alam et al. · Nature Genetics · 2023 · 103 citations · Full text

, , +14

Integration of spatial and single-cell data across modalities with weakly linked features

Shuxiao Chen, Bokai Zhu, Sijia Huang et al. · Nature Biotechnology · 2023 · 102 citations · Full text

, , +17

A spatially resolved multi-omic single-cell atlas of soybean development

Xuan Zhang, Ziliang Luo, Alexandre P. Marand et al. · Cell · 2024 · 95 citations · Full text

, , +14

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics

Vitalii Kleshchevnikov, Artem Shmatko, Emma Dann et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2020 · 94 citations · Full text

, , +17

1–5 of 7

Authors

52

  1. SB
    Sohyun Bang

    Seoul National University, South Korea

    1 publications · 95 citations

    1

    h-index

  2. BZ
    Bokai Zhu

    Stanford University, United States

    1 publications · 102 citations

    1

    h-index

  3. HW
    Hamish W. King

    Queen Mary University of London, United Kingdom

    1 publications · 94 citations

    1

    h-index

  4. MG
    Moritz Gerstung

    Wellcome Sanger Institute, United Kingdom

    1 publications · 94 citations

    1

    h-index

  5. TJ
    Tjeerd Jellema

    University of Hull, United Kingdom

    1 publications · 77 citations

    1

    h-index

1–5 of 52

Institutions

28

  1. University of Cambridge

    Cambridge, United Kingdom

    2 h-index

    2 publications

    129 citations

  2. Wellcome Sanger Institute

    Cambridge, United Kingdom

    2 h-index

    17 publications

    1.5K citations

  3. Yale University

    New Haven, United States

    1 h-index

    1 publications

    102 citations

  4. University of Hull

    Hull, United Kingdom

    1 h-index

    1 publications

    77 citations

  5. Jackson Laboratory

    Bar Harbor, United States

    1 h-index

    1 publications

    35 citations

  6. John Radcliffe Hospital

    Oxford, United Kingdom

    1 h-index

    1 publications

    149 citations

  7. European Molecular Biology Laboratory

    Heidelberg, Germany

    1 h-index

    3 publications

    282 citations

  8. Helmholtz Institute Mainz

    Mainz, Germany

    1 h-index

    1 publications

    35 citations

1–8 of 28

Venues

  1. Nature Biotechnology

    2 publications · 251 citations

    2

    h-index

  2. Circulation Research

    1 publications · 35 citations

    1

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 94 citations

    1

    h-index

  4. Nature Genetics

    1 publications · 103 citations

    1

    h-index

  5. Cell

    1 publications · 95 citations

    1

    h-index

1–5