Concepedia

Spatial Cell Segmentation

Spatial Cell Segmentation is a computational method that identifies and delineates individual cell boundaries within spatially resolved molecular datasets by integrating morphological imaging features with location-specific gene expression profiles to enable precise cellular-level analysis in native tissue architectures.

57

Publications

3.3K

Citations

373

Authors

196

Institutions

Publications per year

2017–2026

42

Parents

Publications

57

Cell segmentation in imaging-based spatial transcriptomics

Viktor Petukhov, Rosalind J. Xu, Ruslan Soldatov et al. · Nature Biotechnology · 2021 · 422 citations

, , +14

BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis

Vipul Singhal, Nigel Chou, Joseph Lee et al. · Nature Genetics · 2024 · 224 citations · Full text

, , +16

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos

Johannes Stegmaier, Fernando Amat, William C. Lemon et al. · Developmental Cell · 2016 · 200 citations · Full text

, , +16

Highly accurate differentiation of bone marrow cell morphologies using deep neural networks on a large image data set

Christian Matek, Sebastian Krappe, Christian Münzenmayer et al. · Blood · 2021 · 185 citations · Full text

, , +11

Whole-body integration of gene expression and single-cell morphology

Hernando Martínez Vergara, Constantin Pape, Kimberly Meechan et al. · Cell · 2021 · 153 citations · Full text

, , +17

1–5 of 57

Authors

373

  1. NI
    Naveed Ishaque

    Heidelberg University, Germany

    4 publications · 300 citations

    4

    h-index

  2. DR
    David R. Glass

    Stanford University, United States

    2 publications · 64 citations

    2

    h-index

  3. AK
    Anna Kreshuk

    Heidelberg University, Germany

    2 publications · 181 citations

    2

    h-index

  4. DC
    Daniel C. Jones

    University of Washington, United States

    2 publications · 64 citations

    2

    h-index

  5. DR
    David R. Ghasemi

    German Cancer Research Center, Germany

    2 publications · 36 citations

    2

    h-index

1–5 of 373

Institutions

196

  1. Harvard University

    Cambridge, United States

    6 h-index

    21 publications

    3K citations

  2. Heidelberg University

    Heidelberg, Germany

    6 h-index

    37 publications

    1.6K citations

  3. University Hospital Heidelberg

    Heidelberg, Germany

    4 h-index

    8 publications

    248 citations

  4. Berlin Institute of Health at Charité - Universitätsmedizin Berlin

    Berlin, Germany

    4 h-index

    14 publications

    1K citations

  5. German Cancer Research Center

    Heidelberg, Germany

    4 h-index

    30 publications

    852 citations

  6. European Molecular Biology Laboratory

    Heidelberg, Germany

    4 h-index

    6 publications

    502 citations

  7. National University of Singapore

    Singapore, Singapore

    3 h-index

    6 publications

    724 citations

  8. University of Washington

    Seattle, United States

    3 h-index

    3 publications

    134 citations

1–8 of 196

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 11 publications · 300 citations

    10

    h-index

  2. Nature Communications

    5 publications · 348 citations

    5

    h-index

  3. Nature Methods

    3 publications · 220 citations

    3

    h-index

  4. Blood

    2 publications · 199 citations

    2

    h-index

  5. Biomedical Signal Processing and Control

    2 publications · 63 citations

    2

    h-index

1–5