Concepedia

Single-cell Transcriptome Integration

Single-Cell Transcriptome Integration is a computational framework that harmonizes gene expression profiles across individual cells from disparate single-cell RNA sequencing datasets or modalities to enable joint analysis while preserving biological heterogeneity and mitigating technical variation.

53

Publications

3.9K

Citations

575

Authors

211

Institutions

Publications per year

2017–2026

53

Parents

Publications

53

Efficient integration of heterogeneous single-cell transcriptomes using Scanorama

Brian Hie, Bryan D. Bryson, Bonnie Berger · Nature Biotechnology · 2019 · 1K citations · Full text

, , +14

Cardiomyocyte gene programs encoding morphological and functional signatures in cardiac hypertrophy and failure

Seitaro Nomura, Masahiro Satoh, Takanori Fujita et al. · Nature Communications · 2018 · 284 citations · Full text

, , +17

Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics

Karthik A. Jagadeesh, Kushal K. Dey, Daniel T. Montoro et al. · Nature Genetics · 2022 · 247 citations · Full text

, , +16

Integrative analyses of single-cell transcriptome and regulome using MAESTRO

Chenfei Wang, Dongqing Sun, Xin Huang et al. · Genome biology · 2020 · 217 citations · Full text

, , +17

scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning

Yingxin Lin, Tung-Yu Wu, Sheng Wan et al. · Nature Biotechnology · 2022 · 172 citations · Full text

, , +14

1–5 of 53

Authors

575

  1. RA
    Rubén Adrián Grosso

    Universidad Nacional de Cuyo, Argentina

    2 publications · 174 citations

    2

    h-index

  2. SJ
    Sirpa Jalkanen

    University of Turku, Finland

    2 publications · 174 citations

    2

    h-index

  3. DĐ
    Denis Đermadi

    Stanford University, United States

    2 publications · 174 citations

    2

    h-index

  4. MV
    Michael Vanlandewijck

    Uppsala University, Sweden

    2 publications · 174 citations

    2

    h-index

  5. MX
    Menglan Xiang

    VA Palo Alto Health Care System, United States

    2 publications · 174 citations

    2

    h-index

1–5 of 575

Institutions

211

  1. Chinese Academy of Medical Sciences & Peking Union Medical College

    Beijing, China

    4 h-index

    10 publications

    610 citations

  2. The University of Tokyo

    Tokyo, Japan

    4 h-index

    53 publications

    6.1K citations

  3. Stanford University

    Stanford, United States

    4 h-index

    11 publications

    1.3K citations

  4. Harvard University

    Cambridge, United States

    3 h-index

    10 publications

    2.1K citations

  5. Peking University

    Beijing, China

    3 h-index

    11 publications

    344 citations

  6. The University of Sydney

    Sydney, Australia

    2 h-index

    7 publications

    760 citations

  7. University of Chinese Academy of Sciences

    Beijing, China

    2 h-index

    18 publications

    990 citations

  8. University of Turku

    Turku, Finland

    2 h-index

    4 publications

    348 citations

1–8 of 211

Venues

  1. Nature Communications

    6 publications · 507 citations

    6

    h-index

  2. Frontiers in Immunology

    4 publications · 181 citations

    4

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 145 citations

    3

    h-index

  4. Frontiers in Genetics

    3 publications · 82 citations

    3

    h-index

  5. Journal of Translational Medicine

    JTM · 2 publications · 65 citations

    2

    h-index

1–5