Concepedia

Single-cell State Inference

Single-Cell State Inference is a computational method within systems biology that identifies and characterizes the dynamic functional states of individual cells from high-dimensional single-cell omics data by distinguishing transcriptional or epigenetic variability associated with cellular identity, activity, or developmental trajectory.

66

Publications

16.7K

Citations

395

Authors

188

Institutions

Publications per year

2017–2026

55

Parents

Publications

66

SCENIC: single-cell regulatory network inference and clustering

Sara Aibar, Carmen Bravo González‐Blas, Thomas Moerman et al. · Nature Methods · 2017 · 6.9K citations · Full text

, , +17

A comparison of single-cell trajectory inference methods

Wouter Saelens, Robrecht Cannoodt, Helena Todorov et al. · Nature Biotechnology · 2019 · 1.7K citations

, , +10

CancerSEA: a cancer single-cell state atlas

Huating Yuan, Min Yan, Guanxiong Zhang et al. · Nucleic Acids Research · 2018 · 1.1K citations · Full text

, , +17

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

Carmen Bravo González‐Blas, Seppe De Winter, Gert Hulselmans et al. · Nature Methods · 2023 · 689 citations · Full text

, , +17

Single mRNA Molecules Demonstrate Probabilistic Movement in Living Mammalian Cells

Dahlene N. Fusco, Nathalie Accornero, Brigitte Lavoie et al. · Current Biology · 2003 · 584 citations · Full text

, , +9

1–5 of 66

Authors

395

  1. JW
    Jasper Wouters

    KU Leuven, Belgium

    4 publications · 7.8K citations

    4

    h-index

  2. SA
    Stein Aerts

    KU Leuven, Belgium

    4 publications · 7.8K citations

    4

    h-index

  3. GH
    Gert Hulselmans

    KU Leuven, Belgium

    4 publications · 7.8K citations

    4

    h-index

  4. SA
    Sara Aibar

    KU Leuven, Belgium

    4 publications · 7.8K citations

    4

    h-index

  5. CB
    Carmen Bravo González‐Blas

    VIB-KU Leuven Center for Brain & Disease Research, Belgium

    4 publications · 7.8K citations

    4

    h-index

1–5 of 395

Institutions

188

  1. Harvard University

    Cambridge, United States

    9 h-index

    43 publications

    11.9K citations

  2. Center for Systems Biology

    Boston, United States

    6 h-index

    14 publications

    2.4K citations

  3. SIB Swiss Institute of Bioinformatics

    Lausanne, Switzerland

    5 h-index

    15 publications

    2.2K citations

  4. KU Leuven

    Leuven, Belgium

    4 h-index

    41 publications

    90.2K citations

  5. VIB-KU Leuven Center for Brain & Disease Research

    Leuven, Belgium

    4 h-index

    34 publications

    56.8K citations

  6. Northeastern University

    Boston, United States

    3 h-index

    3 publications

    99 citations

  7. University of Cambridge

    Cambridge, United Kingdom

    3 h-index

    3 publications

    113 citations

  8. California Institute of Technology

    Pasadena, United States

    3 h-index

    18 publications

    1.9K citations

1–8 of 188

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 9 publications · 413 citations

    9

    h-index

  2. Nature Methods

    6 publications · 8.2K citations

    6

    h-index

  3. Nature Biotechnology

    4 publications · 2K citations

    4

    h-index

  4. Nature Communications

    3 publications · 666 citations

    3

    h-index

  5. Cell Systems

    3 publications · 350 citations

    3

    h-index

1–5