Concepedia

Sequence Profile Generation

Sequence Profile Generation is a computational method in protein threading that constructs a position-specific scoring matrix representing the evolutionary conservation and amino acid preferences at each residue position of a protein family, derived from multiple sequence alignments, to enhance the accuracy of template-based structure prediction.

69

Publications

7.8K

Citations

198

Authors

86

Institutions

Publications per year

2017–2026

11

Parents

Publications

69

FFAS03: a server for profile-profile sequence alignments

Lukasz Jaroszewski, Leszek Rychlewski, Z. Li et al. · Nucleic Acids Research · 2005 · 605 citations · Full text

, , +16

Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains

Nucleic Acids Research · 2005 · 543 citations · Full text

, , +14

Improved prediction of protein secondary structure by use of sequence profiles and neural networks.

Burkhard Rost, Chris Sander · Proceedings of the National Academy of Sciences · 1993 · 518 citations

, , +13

Biological identifications through DNA barcodes: the case of the Crustacea

Filipe O. Costa, Jeremy R deWaard, James A. Boutillier et al. · Canadian Journal of Fisheries and Aquatic Sciences · 2007 · 490 citations

, , +16

Comparison of sequence profiles. Strategies for structural predictions using sequence information

Leszek Rychlewski, Weizhong Li, Lukasz Jaroszewski et al. · Protein Science · 2000 · 467 citations · Full text

, , +17

1–5 of 69

Authors

198

  1. YY
    Yuedong Yang

    Sun Yat-sen University, China

    3 publications · 94 citations

    3

    h-index

  2. AY
    An‐Suei Yang

    Genomics Research Center, Academia Sinica, Taiwan

    3 publications · 165 citations

    3

    h-index

  3. JR
    John R. Desjarlais

    Xencor (United States), United States

    3 publications · 232 citations

    3

    h-index

  4. LA
    L. Aravind

    National Center for Biotechnology Information, United States

    2 publications · 262 citations

    2

    h-index

  5. VA
    Vivek Anantharaman

    National Center for Biotechnology Information, United States

    2 publications · 262 citations

    2

    h-index

1–5 of 198

Institutions

86

  1. Pennsylvania State University

    State College, United States

    4 h-index

    10 publications

    539 citations

  2. National Center for Biotechnology Information

    Bethesda, United States

    3 h-index

    6 publications

    1.2K citations

  3. Columbia University

    New York, United States

    3 h-index

    6 publications

    330 citations

  4. National Institutes of Health

    Bethesda, United States

    3 h-index

    6 publications

    1.2K citations

  5. San Diego Supercomputer Center

    San Diego, United States

    3 h-index

    5 publications

    978 citations

  6. European Molecular Biology Laboratory

    Hamburg, Germany

    2 h-index

    2 publications

    254 citations

  7. Sun Yat-sen University

    Guangzhou, China

    2 h-index

    17 publications

    595 citations

  8. Tarbiat Modares University

    Tehran, Iran

    2 h-index

    4 publications

    124 citations

1–8 of 86

Venues

  1. Proteins Structure Function and Bioinformatics

    9 publications · 742 citations

    9

    h-index

  2. Bioinformatics

    10 publications · 861 citations

    9

    h-index

  3. Nucleic Acids Research

    7 publications · 1.7K citations

    7

    h-index

  4. BMC Bioinformatics

    5 publications · 88 citations

    5

    h-index

  5. Protein Science

    PS · 5 publications · 1.1K citations

    5

    h-index

1–5