Concepedia

Sequence Alignment Scoring

Sequence Alignment Scoring is a formal metric used in dynamic programming for alignment that quantifies the quality of alignments between biological sequences by assigning scores to matches, mismatches, and gap events, distinguishing it from alternative scoring paradigms through its reliance on explicit substitution matrices and affine gap penalties to optimize alignment accuracy.

163

Publications

11.3K

Citations

376

Authors

223

Institutions

Publications per year

2017–2026

20

Parents

Publications

163

Improved pairwise alignment of genomic dna

Robert S. Harris · 2007 · 903 citations

, , +14

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment.

Burkhard Morgenstern · Bioinformatics · 1999 · 686 citations · Full text

, , +11

A simple method to control over-alignment in the MAFFT multiple sequence alignment program

Kazutaka Katoh, Daron M. Standley · Bioinformatics · 2016 · 624 citations · Full text

, , +14

LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs

Sebastian Will, Tejal Joshi, Ivo L. Hofacker et al. · RNA · 2012 · 413 citations · Full text

, , +16

Improvement of the GenTHREADER method for genomic fold recognition

Liam J. McGuffin, David T. Jones · Bioinformatics · 2003 · 342 citations

, , +17

1–5 of 163

Authors

376

  1. WM
    Webb Miller

    Pennsylvania State University, United States

    6 publications · 348 citations

    6

    h-index

  2. JK
    John Kececioglu

    University of Arizona, United States

    5 publications · 73 citations

    5

    h-index

  3. MC
    Martin C. Frith

    The University of Tokyo, Japan

    4 publications · 397 citations

    4

    h-index

  4. JL
    John L. Spouge

    National Center for Biotechnology Information, United States

    4 publications · 81 citations

    4

    h-index

  5. SL
    Sergey L. Sheetlin

    National Center for Biotechnology Information, United States

    4 publications · 81 citations

    4

    h-index

1–5 of 376

Institutions

223

  1. National Center for Biotechnology Information

    Bethesda, United States

    9 h-index

    22 publications

    717 citations

  2. National Institutes of Health

    Bethesda, United States

    9 h-index

    21 publications

    639 citations

  3. University of Arizona

    Tucson, United States

    8 h-index

    14 publications

    353 citations

  4. Pennsylvania State University

    State College, United States

    8 h-index

    25 publications

    3.4K citations

  5. University of Southern California

    Los Angeles, United States

    5 h-index

    6 publications

    485 citations

  6. Stanford University

    Stanford, United States

    4 h-index

    6 publications

    259 citations

  7. The University of Tokyo

    Tokyo, Japan

    4 h-index

    5 publications

    286 citations

  8. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    4 publications

    54 citations

1–8 of 223

Venues

  1. Bioinformatics

    28 publications · 3.2K citations

    23

    h-index

  2. BMC Bioinformatics

    19 publications · 929 citations

    15

    h-index

  3. Journal of Computational Biology

    14 publications · 580 citations

    12

    h-index

  4. Nucleic Acids Research

    10 publications · 952 citations

    10

    h-index

  5. Computer applications in the biosciences

    CABIOS · 5 publications · 164 citations

    5

    h-index

1–5