Concepedia

Scoring Matrices

Scoring Matrix is a computational tool in bioinformatics that belongs to the class of alignment scoring functions and is specifically designed to quantify the functional relatedness or evolutionary similarity between pairs of biological sequences by assigning scores to amino acid or nucleotide substitutions based on empirical or theoretical models of residue interchangeability.

209

Publications

42.3K

Citations

616

Authors

302

Institutions

Publications per year

2017–2026

29

Variants

Scoring Matrix

Parents

Publications

209

Improved tools for biological sequence comparison.

William R. Pearson, David J. Lipman · Proceedings of the National Academy of Sciences · 1988 · 11.3K citations · Full text

, , +15

Protein secondary structure prediction based on position-specific scoring matrices 1 1Edited by G. Von Heijne

David T. Jones · Journal of Molecular Biology · 1999 · 5.5K citations

, , +10

FIMO: scanning for occurrences of a given motif

Charles E. Grant, Timothy L. Bailey, William Stafford Noble · Bioinformatics · 2011 · 4.9K citations · Full text

, , +14

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

Albin Sandelin · Nucleic Acids Research · 2003 · 1.8K citations · Full text

, , +17

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11

Claus Lundegaard, Kasper Lamberth, Mikkel Harndahl et al. · Nucleic Acids Research · 2008 · 835 citations · Full text

, , +16

1–5 of 209

Authors

616

  1. SF
    Stephen F. Altschul

    National Institutes of Health, United States

    8 publications · 1.5K citations

    8

    h-index

  2. SH
    Steven Henikoff

    Fred Hutch Cancer Center, United States

    5 publications · 926 citations

    5

    h-index

  3. MA
    Mark A. Jensen

    University of Washington, United States

    4 publications · 778 citations

    4

    h-index

  4. RG
    Robert Giegerich

    Bielefeld University, Germany

    4 publications · 214 citations

    4

    h-index

  5. JG
    Jorja G. Henikoff

    Fred Hutch Cancer Center, United States

    4 publications · 862 citations

    4

    h-index

1–5 of 616

Institutions

302

  1. National Institutes of Health

    Bethesda, United States

    13 h-index

    33 publications

    3.7K citations

  2. National Center for Biotechnology Information

    Bethesda, United States

    11 h-index

    29 publications

    3.3K citations

  3. Fred Hutch Cancer Center

    Seattle, United States

    6 h-index

    10 publications

    1.9K citations

  4. University of Washington

    Seattle, United States

    6 h-index

    21 publications

    19.5K citations

  5. Centre National de la Recherche Scientifique

    Paris, France

    6 h-index

    11 publications

    1.5K citations

  6. Bielefeld University

    Bielefeld, Germany

    5 h-index

    15 publications

    2.5K citations

  7. National Institute of Advanced Industrial Science and Technology

    Tsukuba, Japan

    5 h-index

    13 publications

    677 citations

  8. Stanford University

    Stanford, United States

    5 h-index

    8 publications

    939 citations

1–8 of 302

Venues

  1. Bioinformatics

    36 publications · 7.8K citations

    25

    h-index

  2. Nucleic Acids Research

    18 publications · 5.2K citations

    18

    h-index

  3. BMC Bioinformatics

    17 publications · 2.3K citations

    16

    h-index

  4. Journal of Computational Biology

    9 publications · 418 citations

    9

    h-index

  5. PLoS ONE

    8 publications · 417 citations

    8

    h-index

1–5