Concepedia

Sample Cross-contamination Detection

Sample Cross-Contamination Detection is a metagenomic data quality control method that identifies the presence of foreign genetic material in a sample by distinguishing contaminant sequences from target organism sequences based on taxonomic inconsistency, sequence composition, or statistical deviation from expected microbial community profiles.

36

Publications

3.6K

Citations

238

Authors

109

Institutions

Publications per year

2017–2026

15

Parents

Publications

36

Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data

Goo Jun, Matthew Flickinger, Kurt N. Hetrick et al. · The American Journal of Human Genetics · 2012 · 551 citations · Full text

, , +16

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

Philippe Esling, Franck Lejzerowicz, Jan Pawłowski · Nucleic Acids Research · 2015 · 346 citations · Full text

, , +11

ContEst: estimating cross-contamination of human samples in next-generation sequencing data

Kristian Cibulskis, Aaron McKenna, Tim Fennell et al. · Bioinformatics · 2011 · 304 citations · Full text

, , +16

Typing of Dengue Viruses in Clinical Specimens and Mosquitoes by Single-Tube Multiplex Reverse Transcriptase PCR

Eva Harris, T. Guy Roberts, Leila Smith et al. · Journal of Clinical Microbiology · 1998 · 277 citations · Full text

, , +17

Rapid Production of Graphite Without Contamination for Biomedical AMS

John S. Vogel · Radiocarbon · 1992 · 241 citations · Full text

, , +13

1–5 of 36

Authors

238

  1. JS
    John S. Vogel

    Lawrence Livermore National Laboratory, United States

    3 publications · 417 citations

    3

    h-index

  2. YJ
    Yongfeng Jia

    Inner Mongolia Medical University, China

    1 publications · 14 citations

    1

    h-index

  3. XE
    Xavier Estivill

    Centre for Genomic Regulation, Spain

    1 publications · 96 citations

    1

    h-index

  4. JP
    Jan Pawłowski

    University of Geneva, Switzerland

    1 publications · 346 citations

    1

    h-index

  5. KB
    Khalid Belkhir

    Université de Montpellier, France

    1 publications · 113 citations

    1

    h-index

1–5 of 238

Institutions

109

  1. Broad Institute

    Cambridge, United States

    3 h-index

    27 publications

    2.9K citations

  2. Harvard University

    Cambridge, United States

    3 h-index

    14 publications

    985 citations

  3. Dana-Farber Cancer Institute

    Boston, United States

    2 h-index

    2 publications

    237 citations

  4. New York Genome Center

    New York, United States

    2 h-index

    6 publications

    591 citations

  5. Massachusetts Institute of Technology

    Cambridge, United States

    2 h-index

    13 publications

    1.3K citations

  6. University of California, San Francisco

    San Francisco, United States

    2 h-index

    5 publications

    1.1K citations

  7. Massachusetts General Hospital

    Boston, United States

    2 h-index

    7 publications

    255 citations

  8. Université de Montpellier

    Montpellier, France

    2 h-index

    5 publications

    586 citations

1–8 of 109

Venues

  1. Analytical Chemistry

    4 publications · 353 citations

    4

    h-index

  2. Bioinformatics

    3 publications · 479 citations

    3

    h-index

  3. Clinical Chemistry

    2 publications · 149 citations

    2

    h-index

  4. Nucleic Acids Research

    2 publications · 387 citations

    2

    h-index

  5. Radiocarbon

    2 publications · 257 citations

    2

    h-index

1–5