Concepedia

Refinement Of Docked Complexes

Refinement of Docked Complexes is a computational procedure in structural biology that enhances the accuracy of predicted protein-protein interaction geometries by iteratively optimizing interfacial contacts, side-chain conformations, and energetics within a docked complex to achieve near-native structural resolution.

82

Publications

14.3K

Citations

317

Authors

139

Institutions

Publications per year

2017–2026

33

Parents

Publications

82

Glide:  A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy

Richard A. Friesner, Jay L. Banks, Robert B. Murphy et al. · Journal of Medicinal Chemistry · 2004 · 9.9K citations

, , +17

FireDock: a web server for fast interaction refinement in molecular docking

Efrat Mashiach, Dina Schneidman‐Duhovny, Nelly Andrusier et al. · Nucleic Acids Research · 2008 · 756 citations · Full text

, , +17

Use of pair potentials across protein interfaces in screening predicted docked complexes

Gidon Moont, Henry A. Gabb, Michael J.E. Sternberg · Proteins Structure Function and Bioinformatics · 1999 · 258 citations

, , +17

Rapid refinement of protein interfaces incorporating solvation: application to the docking problem

Richard M. Jackson, Henry A. Gabb, Michael J.E. Sternberg · Journal of Molecular Biology · 1998 · 244 citations

, , +16

Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility

Marc van Dijk · Nucleic Acids Research · 2006 · 186 citations · Full text

, , +17

1–5 of 82

Authors

317

  1. MZ
    Martin Zacharias

    Technical University of Munich, Germany

    5 publications · 166 citations

    5

    h-index

  2. MJ
    Michael J.E. Sternberg

    Imperial College London, United Kingdom

    4 publications · 528 citations

    4

    h-index

  3. HA
    Henry A. Gabb

    The Honourable Society of Lincoln's Inn, United Kingdom

    4 publications · 528 citations

    4

    h-index

  4. NH
    Nurit Haspel

    University of Massachusetts Boston, United States

    3 publications · 46 citations

    3

    h-index

  5. BA
    Bahar Akbal-Delibas

    University of Massachusetts Boston, United States

    3 publications · 46 citations

    3

    h-index

1–5 of 317

Institutions

139

  1. Technical University of Munich

    Munich, Germany

    6 h-index

    16 publications

    503 citations

  2. University of Massachusetts Boston

    Boston, United States

    3 h-index

    8 publications

    128 citations

  3. Center for Integrated Protein Science Munich

    Munich, Germany

    3 h-index

    5 publications

    120 citations

  4. University of California, San Francisco

    San Francisco, United States

    2 h-index

    4 publications

    396 citations

  5. Harvard University

    Cambridge, United States

    2 h-index

    2 publications

    106 citations

  6. Utrecht University

    Utrecht, The Netherlands

    2 h-index

    6 publications

    774 citations

  7. Johns Hopkins University

    Baltimore, United States

    2 h-index

    5 publications

    204 citations

  8. Boston University

    Boston, United States

    2 h-index

    6 publications

    332 citations

1–8 of 139

Venues

  1. Proteins Structure Function and Bioinformatics

    12 publications · 861 citations

    12

    h-index

  2. Journal of Biomolecular Structure and Dynamics

    7 publications · 112 citations

    7

    h-index

  3. Journal of Molecular Structure

    5 publications · 117 citations

    5

    h-index

  4. Scientific Reports

    4 publications · 293 citations

    4

    h-index

  5. PLoS ONE

    4 publications · 150 citations

    4

    h-index

1–5