Concepedia

Reference-guided Alignment

Reference-Guided Alignment is a genome alignment strategy that belongs to the class of comparative sequence analysis methods, distinguished by its reliance on an existing reference genome to direct the ordering, orientation, and assembly of sequencing reads or contigs during the alignment process.

23

Publications

2.6K

Citations

87

Authors

37

Institutions

Publications per year

2017–2026

10

Variants

Reference-based Alignment

Parents

Publications

23

RaGOO: fast and accurate reference-guided scaffolding of draft genomes

Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan et al. · Genome biology · 2019 · 764 citations · Full text

, , +17

Simultaneous alignment of short reads against multiple genomes

Korbinian Schneeberger, Jörg Hagmann, Stephan Ossowski et al. · Genome biology · 2009 · 266 citations · Full text

, , +15

Reference-guided assembly of four diverse <i>Arabidopsis thaliana</i> genomes

Korbinian Schneeberger, Stephan Ossowski, Felix Ott et al. · Proceedings of the National Academy of Sciences · 2011 · 265 citations · Full text

, , +17

DARWIN

Wim Kruiskamp, D.M.W. Leenaerts · 1995 · 180 citations · Full text

, , +17

DARWIN

Juan José Jaramillo, R. Srikant · 2007 · 169 citations

, , +17

1–5 of 23

Authors

87

  1. GB
    Gill Bejerano

    Stanford University, United States

    3 publications · 198 citations

    3

    h-index

  2. WJ
    William J. Dally

    Stanford University, United States

    3 publications · 198 citations

    3

    h-index

  3. YT
    Yatish Turakhia

    University of California, Santa Cruz, United States

    3 publications · 198 citations

    3

    h-index

  4. SO
    Stephan Ossowski

    University of Tübingen, Germany

    2 publications · 531 citations

    2

    h-index

  5. NM
    Niema Moshiri

    University of California San Diego, United States

    2 publications · 99 citations

    2

    h-index

1–5 of 87

Institutions

37

  1. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    3 h-index

    13 publications

    4K citations

  2. Stanford University

    Stanford, United States

    3 h-index

    10 publications

    610 citations

  3. Howard Hughes Medical Institute

    Chevy Chase, United States

    3 h-index

    12 publications

    1.1K citations

  4. Johns Hopkins University

    Baltimore, United States

    2 h-index

    6 publications

    2.4K citations

  5. Microsoft (United States)

    Redmond, United States

    2 h-index

    2 publications

    108 citations

  6. New York University

    New York, United States

    2 h-index

    5 publications

    120 citations

  7. Nvidia (United States)

    Santa Clara, United States

    2 h-index

    2 publications

    182 citations

  8. Baylor College of Medicine

    Houston, United States

    2 h-index

    2 publications

    784 citations

1–8 of 37

Venues

  1. Bioinformatics

    3 publications · 134 citations

    3

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 50 citations

    3

    h-index

  3. Genome biology

    2 publications · 1K citations

    2

    h-index

  4. BMC Genomics

    1 publications · 43 citations

    1

    h-index

  5. BioTechniques

    1 publications · 42 citations

    1

    h-index

1–5