Concepedia

Reference-based Clustering

Reference-Based Clustering is a computational method in microbial ecology that clusters DNA sequences into Operational Taxonomic Units by aligning them to a predefined reference database of known sequences, distinguishing it from de novo clustering through its reliance on external taxonomic benchmarks for sequence assignment.

36

Publications

5.6K

Citations

155

Authors

67

Institutions

Publications per year

2017–2026

13

Parents

Publications

36

UniRef: comprehensive and non-redundant UniProt reference clusters

Barış Ethem Süzek, Hongzhan Huang, Peter B. McGarvey et al. · Bioinformatics · 2007 · 1.7K citations · Full text

, , +12

A systematic comparison and evaluation of biclustering methods for gene expression data

Amela Prelić, Stefan Bleuler, Philip Zimmermann et al. · Bioinformatics · 2006 · 918 citations · Full text

, , +14

VALENCIA: a nearest centroid classification method for vaginal microbial communities based on composition

Michael France, Bing Ma, Pawel Gajer et al. · Microbiome · 2020 · 445 citations · Full text

, , +16

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

Michael C. Nelson, Hilary G. Morrison, Jacquelynn Benjamino et al. · PLoS ONE · 2014 · 333 citations · Full text

, , +13

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units

Sarah L. Westcott, Patrick D. Schloss · PeerJ · 2015 · 300 citations · Full text

, , +13

1–5 of 36

Authors

155

  1. YA
    Yong‐Yeol Ahn

    Indiana University Bloomington, United States

    4 publications · 176 citations

    4

    h-index

  2. AJ
    Alexander J. Gates

    Northeastern University, United States

    4 publications · 176 citations

    4

    h-index

  3. IC
    Ilse Cleenwerck

    Ghent University, Belgium

    2 publications · 80 citations

    2

    h-index

  4. KV
    Karin Verspoor

    The University of Melbourne, Australia

    2 publications · 242 citations

    2

    h-index

  5. JB
    James Bailey

    The University of Melbourne, Australia

    2 publications · 242 citations

    2

    h-index

1–5 of 155

Institutions

67

  1. Indiana University Bloomington

    Bloomington, United States

    5 h-index

    8 publications

    341 citations

  2. The University of Melbourne

    Melbourne, Australia

    2 h-index

    8 publications

    968 citations

  3. Vrije Universiteit Brussel

    Brussels, Belgium

    2 h-index

    4 publications

    180 citations

  4. Bielefeld University

    Bielefeld, Germany

    2 h-index

    7 publications

    175 citations

  5. Ghent University

    Ghent, Belgium

    1 h-index

    2 publications

    54 citations

  6. German Centre for Integrative Biodiversity Research

    Leipzig, Germany

    1 h-index

    1 publications

    97 citations

  7. Museum für Naturkunde

    Berlin, Germany

    1 h-index

    2 publications

    194 citations

  8. United States Food and Drug Administration

    Silver Spring, United States

    1 h-index

    9 publications

    387 citations

1–8 of 67

Venues

  1. Bioinformatics

    3 publications · 2.7K citations

    3

    h-index

  2. PeerJ

    3 publications · 383 citations

    3

    h-index

  3. BMC Bioinformatics

    3 publications · 58 citations

    3

    h-index

  4. Journal of Machine Learning Research

    JMLR · 2 publications · 167 citations

    2

    h-index

  5. arXiv (Cornell University)

    Repository · 2 publications · 146 citations

    2

    h-index

1–5