Concepedia

Reference-assisted Diploid Assembly

Reference-Assisted Diploid Assembly is a diploid genome assembly method that leverages a reference genome to guide the reconstruction of both haplotype sequences, distinguishing itself from de novo approaches by incorporating external genomic information to improve accuracy and continuity.

16

Publications

1.3K

Citations

166

Authors

73

Institutions

Publications per year

2017–2026

12

Parents

Publications

16

<i>De novo</i> PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads

Jonas Korlach, Gregory Gedman, Sarah B. Kingan et al. · GigaScience · 2017 · 266 citations · Full text

, , +17

Assembly of polymorphic genomes: Algorithms and application to <i>Ciona savignyi</i>

Jade P. Vinson, David B. Jaffe, Keith O'Neill et al. · Genome Research · 2005 · 194 citations · Full text

, , +17

A near-chromosome-scale genome assembly of the gemsbok (<i>Oryx gazella</i>): an iconic antelope of the Kalahari desert

Marta Farré, Qiye Li, Yang Zhou et al. · GigaScience · 2019 · 174 citations · Full text

, , +14

HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies

Shengfeng Huang, Zelin Chen, Guangrui Huang et al. · Genome Research · 2012 · 120 citations · Full text

, , +15

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

Kerrin S. Small, Michael Brudno, M. Manuela Hill et al. · Genome biology · 2007 · 108 citations · Full text

, , +17

1–5 of 16

Authors

166

  1. KV
    Karine Van Doninck

    University of Namur, Belgium

    2 publications · 67 citations

    2

    h-index

  2. AS
    Arend Sidow

    Stanford University, United States

    2 publications · 126 citations

    2

    h-index

  3. AH
    Antoine Houtain

    University of Namur, Belgium

    2 publications · 67 citations

    2

    h-index

  4. AD
    Alessandro Derzelle

    University of Namur, Belgium

    2 publications · 67 citations

    2

    h-index

  5. NG
    Nadège Guiglielmoni

    Université Libre de Bruxelles, Belgium

    2 publications · 67 citations

    2

    h-index

1–5 of 166

Institutions

73

  1. University of California, Davis

    Davis, United States

    2 h-index

    4 publications

    342 citations

  2. Chinese Academy of Sciences

    Beijing, China

    2 h-index

    11 publications

    861 citations

  3. Stanford Medicine

    Stanford, United States

    2 h-index

    4 publications

    342 citations

  4. Stanford University

    Stanford, United States

    2 h-index

    8 publications

    414 citations

  5. University of Namur

    Namur, Belgium

    2 h-index

    6 publications

    201 citations

  6. Université Libre de Bruxelles

    Brussels, Belgium

    2 h-index

    6 publications

    201 citations

  7. 3E (Belgium)

    Brussels, Belgium

    1 h-index

    1 publications

    12 citations

  8. Capital Medical University

    Beijing, China

    1 h-index

    1 publications

    57 citations

1–8 of 73

Venues

  1. GigaScience

    3 publications · 479 citations

    3

    h-index

  2. Genome biology

    2 publications · 160 citations

    2

    h-index

  3. BMC Bioinformatics

    2 publications · 78 citations

    2

    h-index

  4. Frontiers in Plant Science

    2 publications · 93 citations

    2

    h-index

  5. Genome Research

    GR · 2 publications · 314 citations

    2

    h-index

1–5