Concepedia

Read-based Phasing

Read-Based Phasing is a computational method in diploid genome assembly that resolves haplotype-specific sequences by assigning heterozygous variants to their respective parental chromosomes based on co-occurring alleles within individual sequencing reads or read pairs.

10

Publications

1.4K

Citations

132

Authors

48

Institutions

Publications per year

2017–2026

6

Variants

Read-based Haplotype Phasing

Parents

Publications

10

W <scp>hats</scp> H <scp>ap</scp> : Weighted Haplotype Assembly for Future-Generation Sequencing Reads

Murray Patterson, Tobias Marschall, Nadia Pisanti et al. · Journal of Computational Biology · 2015 · 526 citations · Full text

, , +15

WhatsHap: fast and accurate read-based phasing

Marcel Martin, Murray Patterson, Shilpa Garg et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2016 · 510 citations · Full text

, , +17

Read-Based Phasing and Analysis of Phased Variants with WhatsHap

Marcel Martin, Peter Ebert, Tobias Marschall · Methods in molecular biology · 2022 · 83 citations · Full text

, , +16

The EN-TEx resource of multi-tissue personal epigenomes &amp; variant-impact models

Joel Rozowsky, Jiahao Gao, Beatrice Borsari et al. · Cell · 2023 · 81 citations · Full text

, , +16

Read-based phasing of related individuals

Shilpa Garg, Marcel Martin, Tobias Marschall · Bioinformatics · 2016 · 55 citations · Full text

, , +16

1–5 of 10

Authors

132

  1. TM
    Tobias Marschall

    Heinrich Heine University Düsseldorf, Germany

    5 publications · 1.2K citations

    5

    h-index

  2. MM
    Marcel Martin

    Science for Life Laboratory, Sweden

    4 publications · 658 citations

    4

    h-index

  3. SG
    Shilpa Garg

    Harvard University, United States

    3 publications · 575 citations

    3

    h-index

  4. MP
    Murray Patterson

    Georgia State University, United States

    2 publications · 1K citations

    2

    h-index

  5. NP
    Nadia Pisanti

    University of Pisa, Italy

    2 publications · 1K citations

    2

    h-index

1–5 of 132

Institutions

48

  1. Science for Life Laboratory

    Stockholm, Sweden

    4 h-index

    4 publications

    658 citations

  2. Saarland University

    Saarbrücken, Germany

    4 h-index

    8 publications

    2.2K citations

  3. Max Planck Institute for Informatics

    Saarbrücken, Germany

    4 h-index

    7 publications

    1.7K citations

  4. Stockholm University

    Stockholm, Sweden

    3 h-index

    3 publications

    148 citations

  5. University of Washington

    Seattle, United States

    2 h-index

    3 publications

    179 citations

  6. University of Pisa

    Pisa, Italy

    2 h-index

    2 publications

    1K citations

  7. HudsonAlpha Institute for Biotechnology

    Huntsville, United States

    1 h-index

    4 publications

    324 citations

  8. University of Hong Kong

    Pok Fu Lam, Hong Kong

    1 h-index

    1 publications

    81 citations

1–8 of 48

Venues

  1. Bioinformatics

    3 publications · 100 citations

    3

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 520 citations

    2

    h-index

  3. BMC Genomics

    1 publications · 37 citations

    1

    h-index

  4. Genome biology

    1 publications · 27 citations

    1

    h-index

  5. Methods in molecular biology

    Book series · 1 publications · 83 citations

    1

    h-index

1–5