Concepedia

Pseudotime Ordering Algorithms

Pseudotime Ordering Algorithms is a computational methodology that infers the temporal progression of cells in a biological process by constructing a latent ordering from high-dimensional single-cell data based on transcriptional similarity, thereby enabling the reconstruction of dynamic trajectories in the absence of explicit time measurements.

8

Publications

1.2K

Citations

21

Authors

14

Institutions

Publications per year

2017–2026

4

Variants

Pseudotime Inference Algorithms

Parents

Publications

8

TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis

Zhicheng Ji, Hongkai Ji · Nucleic Acids Research · 2016 · 716 citations · Full text

, , +17

LEAP: constructing gene co-expression networks for single-cell RNA-sequencing data using pseudotime ordering

Alicia T. Specht, Jun Li · Bioinformatics · 2016 · 210 citations · Full text

, , +17

GeneSwitches: ordering gene expression and functional events in single-cell experiments

Elaine Yiqun Cao, John F. Ouyang, Owen J. L. Rackham · Bioinformatics · 2020 · 130 citations

, , +17

psupertime: supervised pseudotime analysis for time-series single-cell RNA-seq data

Will Macnair, Revant Gupta, Manfred Claassen · Bioinformatics · 2022 · 49 citations · Full text

, , +15

Laplacian eigenmaps and principal curves for high resolution pseudotemporal ordering of single-cell RNA-seq profiles

Kieran R. Campbell, Chris P. Ponting, Caleb Webber · bioRxiv (Cold Spring Harbor Laboratory) · 2015 · 48 citations · Full text

, , +12

1–5 of 8

Authors

21

  1. KR
    Kieran R. Campbell

    University of Oxford, United Kingdom

    2 publications · 70 citations

    2

    h-index

  2. OJ
    Owen J. L. Rackham

    Duke-NUS Medical School, Singapore

    1 publications · 130 citations

    1

    h-index

  3. CY
    Christopher Yau

    University of Oxford, United Kingdom

    1 publications · 22 citations

    1

    h-index

  4. CW
    Caleb Webber

    University of Oxford, United Kingdom

    1 publications · 48 citations

    1

    h-index

  5. HJ
    Hongkai Ji

    Johns Hopkins University, United States

    1 publications · 716 citations

    1

    h-index

1–5 of 21

Institutions

14

  1. Genomics (United Kingdom)

    Oxford, United Kingdom

    2 h-index

    4 publications

    166 citations

  2. University of Oxford

    Oxford, United Kingdom

    2 h-index

    5 publications

    188 citations

  3. Åbo Akademi University

    Turku, Finland

    1 h-index

    4 publications

    72 citations

  4. The Alan Turing Institute

    London, United Kingdom

    1 h-index

    1 publications

    15 citations

  5. University of Cambridge

    Cambridge, United Kingdom

    1 h-index

    3 publications

    45 citations

  6. ETH Zurich

    Zurich, Switzerland

    1 h-index

    1 publications

    49 citations

  7. Johns Hopkins University

    Baltimore, United States

    1 h-index

    2 publications

    1.4K citations

  8. MRC Biostatistics Unit

    Cambridge, United Kingdom

    1 h-index

    3 publications

    45 citations

1–8 of 14

Venues

  1. Bioinformatics

    5 publications · 422 citations

    5

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 70 citations

    2

    h-index

  3. Nucleic Acids Research

    1 publications · 716 citations

    1

    h-index

1–3