Concepedia

Pseudoknot Prediction

Pseudoknot Prediction is a computational method in RNA structure analysis that identifies non-nested base-pairing interactions in RNA molecules, distinguishing itself from standard secondary structure prediction by explicitly modeling topological dependencies that violate the nested parenthesis assumption.

156

Publications

12.6K

Citations

388

Authors

182

Institutions

Publications per year

2017–2026

32

Parents

Publications

156

Improved predictions of secondary structures for RNA.

J. A. Jaeger, Douglas H. Turner, Michael Zuker · Proceedings of the National Academy of Sciences · 1989 · 821 citations · Full text

, , +17

A dynamic programming algorithm for RNA structure prediction including pseudoknots 1 1Edited by I. Tinoco

Elena Rivas, Sean R. Eddy · Journal of Molecular Biology · 1999 · 768 citations

, , +11

Automated <i>de novo</i> prediction of native-like RNA tertiary structures

Rhiju Das, David Baker · Proceedings of the National Academy of Sciences · 2007 · 456 citations · Full text

, , +13

RNA secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning

Jaswinder Singh, Jack Hanson, Kuldip K. Paliwal et al. · Nature Communications · 2019 · 453 citations · Full text

, , +15

RNAstructure: web servers for RNA secondary structure prediction and analysis

Stanislav Bellaousov, Jessica S. Reuter, Matthew G. Seetin et al. · Nucleic Acids Research · 2013 · 450 citations · Full text

, , +15

1–5 of 156

Authors

388

  1. DH
    David H. Mathews

    University of Rochester Medical Center, United States

    8 publications · 1.3K citations

    8

    h-index

  2. YK
    Yuki Kato

    The University of Tokyo, Japan

    7 publications · 585 citations

    7

    h-index

  3. TA
    Tatsuya Akutsu

    Kyoto University, Japan

    6 publications · 780 citations

    6

    h-index

  4. KS
    Kengo Sato

    Keio University, Japan

    6 publications · 579 citations

    6

    h-index

  5. GD
    Gary D. Stormo

    Washington University in St. Louis, United States

    6 publications · 618 citations

    6

    h-index

1–5 of 388

Institutions

182

  1. Centre National de la Recherche Scientifique

    Paris, France

    8 h-index

    23 publications

    987 citations

  2. University of British Columbia

    Vancouver, Canada

    7 h-index

    16 publications

    2K citations

  3. Washington University in St. Louis

    St Louis, United States

    5 h-index

    12 publications

    2.7K citations

  4. Nara Institute of Science and Technology

    Ikoma, Japan

    5 h-index

    17 publications

    2.1K citations

  5. Commissariat à l'Énergie Atomique et aux Énergies Alternatives

    Paris, France

    5 h-index

    8 publications

    212 citations

  6. Center for Cancer Research

    Bethesda, United States

    5 h-index

    10 publications

    550 citations

  7. Leiden University

    Leiden, The Netherlands

    5 h-index

    14 publications

    1.5K citations

  8. Keio University

    Tokyo, Japan

    5 h-index

    14 publications

    597 citations

1–8 of 182

Venues

  1. Nucleic Acids Research

    18 publications · 1.5K citations

    17

    h-index

  2. Bioinformatics

    15 publications · 1.6K citations

    15

    h-index

  3. BMC Bioinformatics

    11 publications · 599 citations

    11

    h-index

  4. RNA

    10 publications · 1.1K citations

    10

    h-index

  5. Journal of Computational Biology

    10 publications · 637 citations

    10

    h-index

1–5