Concepedia

Protein Entity Recognition

Protein Entity Recognition is a natural language processing task that identifies and classifies mentions of protein names within biomedical text, distinguishing it from other named entity recognition tasks by its specific focus on protein-related nomenclature in scientific literature.

25

Publications

1.6K

Citations

114

Authors

53

Institutions

Publications per year

2017–2026

6

Parents

Publications

25

ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

Burr Settles · Computer applications in the biosciences · 2005 · 468 citations · Full text

, , +15

ProMiner: rule-based protein and gene entity recognition

Daniel Hanisch, Katrin Fundel, Heinz‐Theodor Mevissen et al. · BMC Bioinformatics · 2005 · 347 citations · Full text

, , +17

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

David Westergaard, Hans-Henrik Stærfeldt, Christian Tønsberg et al. · PLoS Computational Biology · 2018 · 173 citations · Full text

, , +14

How to make the most of NE dictionaries in statistical NER

Yutaka Sasaki, Yoshimasa Tsuruoka, John McNaught et al. · BMC Bioinformatics · 2008 · 57 citations · Full text

, , +11

Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER task

Cong Sun, Zhihao Yang · 2019 · 44 citations · Full text

, , +9

1–5 of 25

Authors

114

  1. SA
    Sophia Ananiadou

    University of Manchester, United Kingdom

    3 publications · 102 citations

    3

    h-index

  2. JM
    John McNaught

    University of Manchester, United Kingdom

    2 publications · 70 citations

    2

    h-index

  3. KV
    K. Vijay‐Shanker

    University of Delaware, United States

    2 publications · 45 citations

    2

    h-index

  4. YT
    Yoshimasa Tsuruoka

    The University of Tokyo, Japan

    2 publications · 70 citations

    2

    h-index

  5. RS
    Rune Sætre

    The University of Tokyo, Japan

    1 publications · 24 citations

    1

    h-index

1–5 of 114

Institutions

53

  1. University of Manchester

    Manchester, United Kingdom

    4 h-index

    12 publications

    400 citations

  2. National Taiwan University

    Taipei, Taiwan

    2 h-index

    4 publications

    86 citations

  3. University of Delaware

    Newark, United States

    2 h-index

    7 publications

    167 citations

  4. University of Trento

    Trento, Italy

    1 h-index

    2 publications

    70 citations

  5. Carnegie Mellon University

    Pittsburgh, United States

    1 h-index

    3 publications

    126 citations

  6. National Tsing Hua University

    Hsinchu, Taiwan

    1 h-index

    1 publications

    32 citations

  7. Tokyo University of Science

    Tokyo, Japan

    1 h-index

    1 publications

    24 citations

  8. Novo Nordisk Foundation

    Copenhagen, Denmark

    1 h-index

    2 publications

    346 citations

1–8 of 53

Venues

  1. BMC Bioinformatics

    6 publications · 522 citations

    6

    h-index

  2. Computer applications in the biosciences

    CABIOS · 2 publications · 510 citations

    2

    h-index

  3. Journal of Biomedical Informatics

    1 publications · 13 citations

    1

    h-index

  4. Mathematical Problems in Engineering

    MPE · 1 publications · 11 citations

    1

    h-index

  5. Expert Systems with Applications

    1 publications · 31 citations

    1

    h-index

1–5