Concepedia

Perturbation Response Analysis

Perturbation Response Analysis is a computational framework that identifies and quantifies dynamic molecular and cellular responses to external or internal perturbations across multiple biological layers over time within the context of temporal multi-omics studies.

33

Publications

1.5K

Citations

149

Authors

72

Institutions

Publications per year

2017–2026

13

Parents

Publications

33

Predicting cellular responses to complex perturbations in high‐throughput screens

Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo De Donno et al. · Molecular Systems Biology · 2023 · 269 citations · Full text

, , +14

MD-TASK: a software suite for analyzing molecular dynamics trajectories

David K. Brown, David L. Penkler, Olivier Sheik Amamuddy et al. · Bioinformatics · 2017 · 221 citations · Full text

, , +15

CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy

Bo Yuan, Ciyue Shen, Augustin Luna et al. · Cell Systems · 2020 · 130 citations · Full text

, , +13

HSP90 inhibitor geldanamycin reverts IL-13– and IL-17–induced airway goblet cell metaplasia

Alejandro A. Pezzulo, R.A. Tudas, Carley G. Stewart et al. · Journal of Clinical Investigation · 2019 · 70 citations · Full text

, , +14

Analysis of Resolution and Noise Properties of Nonquadratically Regularized Image Reconstruction Methods for PET

Sangtae Ahn, Richard M. Leahy · IEEE Transactions on Medical Imaging · 2008 · 64 citations

, , +14

1–5 of 33

Authors

149

  1. GM
    Gennady M. Verkhivker

    Chapman University, United States

    3 publications · 56 citations

    3

    h-index

  2. MT
    Masaru Tomita

    Keio University, Japan

    2 publications · 52 citations

    2

    h-index

  3. AR
    Ali Rana Atılgan

    Sabancı Üniversitesi, Türkiye

    2 publications · 258 citations

    2

    h-index

  4. XW
    Xinling Wang

    Shanghai Jiao Tong University, China

    2 publications · 62 citations

    2

    h-index

  5. KS
    Kumar Selvarajoo

    Keio University, Japan

    2 publications · 52 citations

    2

    h-index

1–5 of 149

Institutions

72

  1. Chapman University

    Orange, United States

    3 h-index

    3 publications

    56 citations

  2. Sabancı Üniversitesi

    Istanbul, Türkiye

    2 h-index

    3 publications

    479 citations

  3. University of California, Berkeley

    Berkeley, United States

    2 h-index

    5 publications

    697 citations

  4. Keio University

    Tokyo, Japan

    2 h-index

    9 publications

    225 citations

  5. Keio University Shonan Fujisawa

    Fujisawa, Japan

    2 h-index

    9 publications

    225 citations

  6. Yale Cancer Center

    New Haven, United States

    1 h-index

    1 publications

    15 citations

  7. University Medical Center

    Lubbock, United States

    1 h-index

    1 publications

    24 citations

  8. University of California, Davis

    Davis, United States

    1 h-index

    2 publications

    106 citations

1–8 of 72

Venues

  1. IEEE Transactions on Medical Imaging

    2 publications · 79 citations

    2

    h-index

  2. Journal of Fluid Mechanics

    2 publications · 34 citations

    2

    h-index

  3. Journal of Thermal Stresses

    2 publications · 62 citations

    2

    h-index

  4. 1

    h-index

  5. Structural and Multidisciplinary Optimization

    1 publications · 16 citations

    1

    h-index

1–5