Concepedia

Pathway Search Algorithms

Pathway Search Algorithms is a computational method that systematically identifies and retrieves biological pathways from pathway databases by matching query conditions or patterns, distinguished by its reliance on graph-based traversal, sequence alignment, or heuristic inference to map molecular interactions within structured pathway models.

42

Publications

2.5K

Citations

159

Authors

74

Institutions

Publications per year

2017–2026

6

Parents

Publications

42

Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

Jacob Scott, Trey Ideker, Richard M. Karp et al. · Journal of Computational Biology · 2006 · 271 citations

, , +11

QPath: a method for querying pathways in a protein-protein interaction network

Tomer Shlomi, Daniel Segal, Eytan Ruppin et al. · BMC Bioinformatics · 2006 · 172 citations · Full text

, , +16

Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path

Miguel A. Campodonico, Bárbara A. Andrews, Juan A. Asenjo et al. · Metabolic Engineering · 2014 · 168 citations · Full text

, , +16

Identification of key pathways and genes in colorectal cancer using bioinformatics analysis

Bin Liang, Chunning Li, Jianying Zhao · Medical Oncology · 2016 · 142 citations

, , +16

The Pathway Tools Pathway Prediction Algorithm

Peter D. Karp, Mario Latendresse, Ron Caspi · Standards in Genomic Sciences · 2011 · 140 citations · Full text

, , +12

1–5 of 42

Authors

159

  1. RS
    Roded Sharan

    Tel Aviv University, Israel

    3 publications · 574 citations

    3

    h-index

  2. TS
    Tomer Shlomi

    Technion – Israel Institute of Technology, Israel

    2 publications · 303 citations

    2

    h-index

  3. XQ
    Xiaoning Qian

    Texas A&M University, United States

    2 publications · 54 citations

    2

    h-index

  4. ER
    Eytan Ruppin

    Tel Aviv University, Israel

    2 publications · 303 citations

    2

    h-index

  5. ML
    Mario Latendresse

    SRI International, United States

    2 publications · 193 citations

    2

    h-index

1–5 of 159

Institutions

74

  1. University of California San Diego

    San Diego, United States

    3 h-index

    7 publications

    1.2K citations

  2. Tel Aviv University

    Tel Aviv, Israel

    3 h-index

    8 publications

    1.4K citations

  3. SRI International

    Menlo Park, United States

    2 h-index

    6 publications

    579 citations

  4. Chinese Academy of Sciences

    Beijing, China

    2 h-index

    4 publications

    181 citations

  5. Texas A&M University

    College Station, United States

    2 h-index

    4 publications

    108 citations

  6. Collaborative Innovation Center of Chemistry for Energy Materials

    Shanghai, China

    1 h-index

    4 publications

    484 citations

  7. National Institutes of Health

    Bethesda, United States

    1 h-index

    4 publications

    156 citations

  8. Georgia State University

    Atlanta, United States

    1 h-index

    3 publications

    33 citations

1–8 of 74

Venues

  1. Bioinformatics

    9 publications · 430 citations

    9

    h-index

  2. BMC Bioinformatics

    5 publications · 252 citations

    5

    h-index

  3. Journal of Computational Biology

    3 publications · 429 citations

    3

    h-index

  4. BMC Systems Biology

    2 publications · 70 citations

    2

    h-index

  5. Journal of the American Chemical Society

    JACS · 2 publications · 244 citations

    2

    h-index

1–5