Concepedia

Pathway Relation Extraction

Pathway Relation Extraction is a computational method that identifies and classifies biological relationships between molecular entities within metabolic or signaling pathways from textual or omics data to enable structured pathway annotation.

13

Publications

1.3K

Citations

53

Authors

25

Institutions

Publications per year

2017–2026

2

Parents

Publications

13

RelEx—Relation extraction using dependency parse trees

Katrin Fundel, Robert Küffner, Ralf Zimmer · Bioinformatics · 2006 · 569 citations · Full text

, , +17

Discovering patterns to extract protein–protein interactions from full texts

Minlie Huang, Xiaoyan Zhu, Yu Hao et al. · Bioinformatics · 2004 · 238 citations · Full text

, , +17

PathFinder: mining signal transduction pathway segments from protein-protein interaction networks

Gürkan Bebek, Jiong Yang · BMC Bioinformatics · 2007 · 120 citations · Full text

, , +17

Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser

Daniel McDonald, Hsinchun Chen, Hua Su et al. · Bioinformatics · 2004 · 67 citations · Full text

, , +17

A text-mining system for extracting metabolic reactions from full-text articles

Jan Czarnecki, Irene Nobeli, Adrian Smith et al. · BMC Bioinformatics · 2012 · 58 citations · Full text

, , +12

1–5 of 13

Authors

53

  1. DM
    Daniel McDonald

    University of Arizona, United States

    2 publications · 78 citations

    2

    h-index

  2. BM
    Byron Marshall

    University of Arizona, United States

    2 publications · 78 citations

    2

    h-index

  3. HS
    Hua Su

    Zhejiang University, China

    2 publications · 78 citations

    2

    h-index

  4. CS
    Casey S. Greene

    University of Pennsylvania, United States

    1 publications · 15 citations

    1

    h-index

  5. MW
    Michał Woźniak

    University of Warsaw, Poland

    1 publications · 50 citations

    1

    h-index

1–5 of 53

Institutions

25

  1. University of Arizona

    Tucson, United States

    2 h-index

    8 publications

    312 citations

  2. National University of Singapore

    Singapore, Singapore

    1 h-index

    6 publications

    300 citations

  3. Yonsei University

    Seoul, South Korea

    1 h-index

    3 publications

    87 citations

  4. Farr Institute

    London, United Kingdom

    1 h-index

    1 publications

    15 citations

  5. University of Lübeck

    Lübeck, Germany

    1 h-index

    1 publications

    15 citations

  6. National Yang Ming Chiao Tung University

    Hsinchu, Taiwan

    1 h-index

    2 publications

    32 citations

  7. Ludwig-Maximilians-Universität München

    Munich, Germany

    1 h-index

    3 publications

    1.7K citations

  8. University of Toronto

    Toronto, Canada

    1 h-index

    6 publications

    168 citations

1–8 of 25

Venues

  1. Bioinformatics

    4 publications · 902 citations

    4

    h-index

  2. BMC Bioinformatics

    3 publications · 207 citations

    3

    h-index

  3. BMC Systems Biology

    2 publications · 65 citations

    2

    h-index

  4. BMC Genomics

    1 publications · 16 citations

    1

    h-index

  5. Computer applications in the biosciences

    CABIOS · 1 publications · 35 citations

    1

    h-index

1–5