Concepedia

Pathway Network Reconstruction

Pathway Network Reconstruction is a computational method that integrates single-cell omics data to infer context-specific biological pathway interactions, distinguishing itself by reconstructing dynamic, cell-resolution molecular networks that reflect functional relationships among genes, proteins, or metabolites within a pathway framework.

67

Publications

13.1K

Citations

390

Authors

168

Institutions

Publications per year

2017–2026

22

Parents

Publications

67

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Gabriela Bindea, Bernhard Mlecnik, Hubert Hackl et al. · Bioinformatics · 2009 · 6.7K citations · Full text

, , +15

From genomics to chemical genomics: new developments in KEGG

Minoru Kanehisa · Nucleic Acids Research · 2005 · 3.2K citations · Full text

, , +17

PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways

Huaiyu Mi, Nan Guo, Anish Kejariwal et al. · Nucleic Acids Research · 2006 · 374 citations · Full text

, , +17

Deep learning for inferring gene relationships from single-cell expression data

Ye Yuan, Ziv Bar‐Joseph · Proceedings of the National Academy of Sciences · 2019 · 264 citations · Full text

, , +17

Discovery of biological networks from diverse functional genomic data

Chad L. Myers, Drew N. Robson, Adam Wible et al. · Genome biology · 2005 · 216 citations · Full text

, , +16

1–5 of 67

Authors

390

  1. ZB
    Ziv Bar‐Joseph

    Carnegie Mellon University, United States

    3 publications · 312 citations

    3

    h-index

  2. RA
    Rui Alves

    Universitat de Lleida, Spain

    2 publications · 33 citations

    2

    h-index

  3. RS
    Ruben Samsonyan

    National Academy of Sciences of Armenia, Armenia

    2 publications · 50 citations

    2

    h-index

  4. YY
    Ye Yuan

    Shanghai Jiao Tong University, China

    2 publications · 277 citations

    2

    h-index

  5. HZ
    Hongyu Zhao

    Yale University, United States

    2 publications · 71 citations

    2

    h-index

1–5 of 390

Institutions

168

  1. Stanford University

    Stanford, United States

    4 h-index

    15 publications

    932 citations

  2. Center for Systems Biology

    Boston, United States

    4 h-index

    5 publications

    155 citations

  3. University of Verona

    Verona, Italy

    3 h-index

    10 publications

    284 citations

  4. Carnegie Mellon University

    Pittsburgh, United States

    3 h-index

    7 publications

    659 citations

  5. Yale University

    New Haven, United States

    2 h-index

    3 publications

    132 citations

  6. Tsinghua University

    Beijing, China

    2 h-index

    4 publications

    96 citations

  7. University of Bologna

    Bologna, Italy

    2 h-index

    8 publications

    318 citations

  8. Imperial College London

    London, United Kingdom

    2 h-index

    6 publications

    109 citations

1–8 of 168

Venues

  1. Bioinformatics

    6 publications · 6.8K citations

    6

    h-index

  2. F1000Research

    6 publications · 139 citations

    6

    h-index

  3. BMC Bioinformatics

    5 publications · 245 citations

    5

    h-index

  4. npj Systems Biology and Applications

    3 publications · 108 citations

    3

    h-index

  5. Proceedings of the National Academy of Sciences

    PNAS · 3 publications · 363 citations

    3

    h-index

1–5