Concepedia

Pathway Data Models

Pathway Data Models is a formal computational framework that structurally represents biological pathways by specifying the relationships among molecular entities and their interactions, distinguished by its focus on encoding pathway topology, dynamics, and biological semantics for integration, analysis, and interpretation within pathway databases.

91

Publications

9.9K

Citations

459

Authors

172

Institutions

Publications per year

2017–2026

17

Parents

Publications

91

Reactome: a knowledgebase of biological pathways

Nucleic Acids Research · 2004 · 1.3K citations · Full text

, , +17

The ConsensusPathDB interaction database: 2013 update

Atanas Kamburov, Ulrich Stelzl, Hans Lehrach et al. · Nucleic Acids Research · 2012 · 867 citations · Full text

, , +17

PANTHER Pathway: An Ontology-Based Pathway Database Coupled with Data Analysis Tools

Huaiyu Mi, Paul D. Thomas · Methods in molecular biology · 2009 · 783 citations · Full text

, , +16

WikiPathways: Pathway Editing for the People

Alexander R. Pico, Thomas Kelder, Martijn van Iersel et al. · PLoS Biology · 2008 · 731 citations · Full text

, , +14

SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database

Timothy Jewison, Yilu Su, Fatemeh Miri Disfani et al. · Nucleic Acids Research · 2013 · 492 citations · Full text

, , +17

1–5 of 91

Authors

459

  1. ED
    Emek Demir

    Oregon Health & Science University, United States

    9 publications · 625 citations

    9

    h-index

  2. ÖB
    Özgün Babur

    Oregon Health & Science University, United States

    7 publications · 729 citations

    7

    h-index

  3. CS
    Chris Sander

    Memorial Sloan Kettering Cancer Center, United States

    7 publications · 642 citations

    7

    h-index

  4. GD
    Gary D. Bader

    University of Toronto, Canada

    6 publications · 733 citations

    6

    h-index

  5. UD
    Uğur Doğrusöz

    Bilkent University, Türkiye

    5 publications · 632 citations

    5

    h-index

1–5 of 459

Institutions

172

  1. University of Toronto

    Toronto, Canada

    8 h-index

    31 publications

    5.8K citations

  2. Memorial Sloan Kettering Cancer Center

    New York, United States

    8 h-index

    29 publications

    1.5K citations

  3. European Bioinformatics Institute

    Cambridge, United Kingdom

    5 h-index

    30 publications

    3.8K citations

  4. Harvard University

    Cambridge, United States

    5 h-index

    16 publications

    1.4K citations

  5. Bilkent University

    Ankara, Türkiye

    5 h-index

    16 publications

    1.8K citations

  6. Maastricht University

    Maastricht, The Netherlands

    4 h-index

    18 publications

    6.8K citations

  7. Gladstone Institutes

    San Francisco, United States

    4 h-index

    10 publications

    3.6K citations

  8. Stanford University

    Stanford, United States

    4 h-index

    7 publications

    1.1K citations

1–8 of 172

Venues

  1. Bioinformatics

    22 publications · 1.5K citations

    20

    h-index

  2. Nucleic Acids Research

    11 publications · 4.1K citations

    11

    h-index

  3. BMC Bioinformatics

    10 publications · 473 citations

    10

    h-index

  4. Briefings in Bioinformatics

    3 publications · 219 citations

    3

    h-index

  5. PubMed

    Repository · 3 publications · 190 citations

    3

    h-index

1–5